Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   AU077_RS08135 Genome accession   NZ_CP013688
Coordinates   1626353..1627399 (-) Length   348 a.a.
NCBI ID   WP_014293978.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621353..1632399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS08130 (AU077_08130) amiF 1625424..1626353 (-) 930 WP_014293979.1 ABC transporter ATP-binding protein Regulator
  AU077_RS08135 (AU077_08135) oppD 1626353..1627399 (-) 1047 WP_014293978.1 ABC transporter ATP-binding protein Regulator
  AU077_RS08140 (AU077_08140) - 1627411..1628442 (-) 1032 WP_014293977.1 ABC transporter permease -
  AU077_RS08145 (AU077_08145) - 1628453..1629367 (-) 915 WP_058621888.1 ABC transporter permease -
  AU077_RS08150 (AU077_08150) - 1629478..1631133 (-) 1656 WP_014293975.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38636.30 Da        Isoelectric Point: 4.9600

>NTDB_id=164066 AU077_RS08135 WP_014293978.1 1626353..1627399(-) (oppD) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=164066 AU077_RS08135 WP_014293978.1 1626353..1627399(-) (oppD) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAAAAGGTGAAACGCTTGCCATAGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTCAAAGGTAAAAAATTAACAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAACAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTCGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCATCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGTATGGCTGATCGTGTTGCTGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACTGATACTGAAGCAGG
AAGCCTTCAATCTATCCCAGGGACACCGCCAGATCTCCTTAATCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAGT
TTGCTTTAGATATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.692

99.713

0.805
  amiE Streptococcus salivarius strain HSISS4

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMG 18311

58.58

97.126

0.569
  amiE Streptococcus thermophilus LMD-9

58.58

97.126

0.569

Multiple sequence alignment