Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AU077_RS01145 Genome accession   NZ_CP013688
Coordinates   225646..226146 (+) Length   166 a.a.
NCBI ID   WP_014295231.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 220646..231146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS01120 (AU077_01120) - 222161..223162 (+) 1002 WP_058621404.1 hypothetical protein -
  AU077_RS01125 (AU077_01125) - 223418..224528 (-) 1111 Protein_233 IS3 family transposase -
  AU077_RS01135 (AU077_01135) - 224955..225119 (+) 165 WP_014295232.1 hypothetical protein -
  AU077_RS01140 (AU077_01140) rpsF 225344..225634 (+) 291 WP_009854900.1 30S ribosomal protein S6 -
  AU077_RS01145 (AU077_01145) ssb 225646..226146 (+) 501 WP_014295231.1 single-stranded DNA-binding protein Machinery gene
  AU077_RS01150 (AU077_01150) rpsR 226207..226446 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  AU077_RS11330 - 226539..226808 (+) 270 WP_223246319.1 hypothetical protein -
  AU077_RS11335 - 226866..227063 (+) 198 WP_223246318.1 hypothetical protein -
  AU077_RS01160 (AU077_01160) - 227066..227275 (+) 210 WP_058621405.1 helix-turn-helix domain-containing protein -
  AU077_RS01165 (AU077_01165) - 227310..227726 (+) 417 WP_230937577.1 hypothetical protein -
  AU077_RS01170 (AU077_01170) - 227772..228428 (-) 657 WP_058621407.1 DUF1129 domain-containing protein -
  AU077_RS01175 (AU077_01175) - 228738..229682 (-) 945 WP_039671195.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18383.98 Da        Isoelectric Point: 4.7187

>NTDB_id=164033 AU077_RS01145 WP_014295231.1 225646..226146(+) (ssb) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADDFQILESRATREGQSGGFNNNNSSFGGSSNGGGFSSQSSQSQTPNFGRDESPFGNSNPMDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=164033 AU077_RS01145 WP_014295231.1 225646..226146(+) (ssb) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGTGATGCAGAACTCCGTTACACACCATCTAATCAAGCCGTTGC
CACATTTACACTTGCTGTAAACCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTATGTAACAGAGATTGTTGCAGATGATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACGGTGGTGGATTCTCAT
CGCAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAATCCAATGGACATTTCA
GATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.614
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

65.663

0.361

Multiple sequence alignment