Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AT706_RS02895 Genome accession   NZ_CP013654
Coordinates   580296..580940 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 575296..585940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS02870 (AT706_02870) - 575711..576079 (-) 369 WP_015483634.1 hypothetical protein -
  AT706_RS21535 - 576257..576319 (-) 63 Protein_572 hypothetical protein -
  AT706_RS02875 (AT706_02875) degQ 576541..576681 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AT706_RS02880 (AT706_02880) - 576866..577726 (+) 861 WP_015483633.1 polyprenyl synthetase family protein -
  AT706_RS02885 (AT706_02885) comX 577739..577903 (+) 165 WP_015384519.1 competence pheromone ComX -
  AT706_RS02890 (AT706_02890) comP 577915..580215 (+) 2301 WP_046340263.1 histidine kinase Regulator
  AT706_RS02895 (AT706_02895) comA 580296..580940 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AT706_RS02900 (AT706_02900) yuxO 580958..581338 (+) 381 WP_015483631.1 hotdog fold thioesterase -
  AT706_RS02905 (AT706_02905) mnhG 581377..581751 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  AT706_RS02910 (AT706_02910) mrpF 581735..582019 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AT706_RS02915 (AT706_02915) mrpE 582019..582495 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AT706_RS02920 (AT706_02920) mrpD 582501..583982 (-) 1482 WP_015384516.1 Na+/H+ antiporter subunit D -
  AT706_RS02925 (AT706_02925) mrpC 583975..584316 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AT706_RS02930 (AT706_02930) mrpB 584316..584747 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=163502 AT706_RS02895 WP_003220716.1 580296..580940(+) (comA) [Bacillus subtilis subsp. subtilis strain BSD-2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=163502 AT706_RS02895 WP_003220716.1 580296..580940(+) (comA) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment