Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   A6L50_RS02850 Genome accession   NZ_CP016680
Coordinates   556211..556828 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22822     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551211..561828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS02830 (A6L50_02830) recD 551924..553669 (-) 1746 WP_002226351.1 exodeoxyribonuclease V subunit alpha Machinery gene
  A6L50_RS02835 (A6L50_02835) lolD 553737..554432 (-) 696 WP_002226350.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A6L50_RS02840 (A6L50_02840) - 554425..555672 (-) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  A6L50_RS02845 (A6L50_02845) - 555877..556155 (+) 279 WP_002220967.1 hypothetical protein -
  A6L50_RS02850 (A6L50_02850) recR 556211..556828 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  A6L50_RS02855 (A6L50_02855) - 556895..558433 (-) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  A6L50_RS02860 (A6L50_02860) - 558488..558862 (-) 375 WP_002258589.1 arsenate reductase -
  A6L50_RS02865 (A6L50_02865) - 559012..560640 (+) 1629 WP_002234899.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=163500 A6L50_RS02850 WP_002217147.1 556211..556828(-) (recR) [Neisseria meningitidis strain M22822]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=163500 A6L50_RS02850 WP_002217147.1 556211..556828(-) (recR) [Neisseria meningitidis strain M22822]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment