Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IJ22_RS21070 Genome accession   NZ_CP013652
Coordinates   4295311..4295790 (+) Length   159 a.a.
NCBI ID   WP_054816952.1    Uniprot ID   -
Organism   Paenibacillus naphthalenovorans strain 32O-Y     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4290311..4300790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IJ22_RS21025 (IJ22_42990) - 4290925..4291419 (+) 495 WP_062410203.1 DUF4446 family protein -
  IJ22_RS21030 (IJ22_43000) yyaC 4291394..4292008 (-) 615 WP_062410204.1 spore protease YyaC -
  IJ22_RS21035 (IJ22_43010) - 4292128..4292370 (+) 243 WP_062410205.1 DUF3343 domain-containing protein -
  IJ22_RS21040 (IJ22_43020) - 4292383..4293309 (+) 927 WP_062410206.1 mechanosensitive ion channel family protein -
  IJ22_RS21045 (IJ22_43030) - 4293309..4293545 (+) 237 WP_054816949.1 DUF951 domain-containing protein -
  IJ22_RS21055 (IJ22_43050) - 4294176..4294427 (-) 252 WP_062410207.1 hypothetical protein -
  IJ22_RS21060 (IJ22_43060) - 4294516..4294701 (-) 186 WP_062410208.1 YjzC family protein -
  IJ22_RS21065 (IJ22_43070) rpsF 4294942..4295226 (+) 285 WP_054816951.1 30S ribosomal protein S6 -
  IJ22_RS21070 (IJ22_43080) ssbA 4295311..4295790 (+) 480 WP_054816952.1 single-stranded DNA-binding protein Machinery gene
  IJ22_RS21075 (IJ22_43090) rpsR 4295837..4296127 (+) 291 WP_062410209.1 30S ribosomal protein S18 -
  IJ22_RS21080 (IJ22_43100) - 4296323..4296739 (+) 417 WP_054816953.1 CBS domain-containing protein -
  IJ22_RS21085 (IJ22_43110) - 4296787..4297098 (+) 312 WP_062410210.1 MazG-like family protein -
  IJ22_RS21090 (IJ22_43120) - 4297095..4298036 (+) 942 WP_375162516.1 DUF2232 domain-containing protein -
  IJ22_RS21095 (IJ22_43130) - 4298063..4300024 (+) 1962 WP_062410212.1 DHH family phosphoesterase -
  IJ22_RS21100 (IJ22_43140) rplI 4300021..4300464 (+) 444 WP_062410213.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17446.28 Da        Isoelectric Point: 4.7920

>NTDB_id=163460 IJ22_RS21070 WP_054816952.1 4295311..4295790(+) (ssbA) [Paenibacillus naphthalenovorans strain 32O-Y]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFSNNQGQREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
SYDNNEGRRVYVTEVIADNVRFLESANSGNRDEGMGMGAGSGGDGGGYRGGYGGGRSQQQDPFQDDGKPIDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=163460 IJ22_RS21070 WP_054816952.1 4295311..4295790(+) (ssbA) [Paenibacillus naphthalenovorans strain 32O-Y]
ATGCTGAATCGTGTGATTCTGATCGGAAGACTGACACGTGACCCTGAACTGCGCTATACGCCCGCAGGTGTGGCTGTAAC
CCAGTTTACACTTGCAGTTGACCGACCTTTCTCAAATAATCAAGGCCAAAGAGAAGCGGATTTTATTCCGGTCGTAACTT
GGCGCCAACTCGCGGAGACTTGTGCGAATTATCTTCGCAAAGGTCGTTTGGCAGCAGTGGAAGGCCGTATTCAGGTACGC
AGCTATGATAACAATGAAGGACGTCGCGTTTATGTGACGGAAGTCATTGCGGACAATGTGCGCTTTCTGGAGTCGGCTAA
CAGCGGCAATCGCGATGAGGGTATGGGAATGGGTGCCGGCAGCGGCGGCGATGGAGGCGGCTACCGTGGAGGTTACGGCG
GAGGACGCAGCCAACAGCAGGATCCTTTCCAGGATGACGGAAAACCGATTGATATTTCTGATGATGATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.598

100

0.597
  ssb Latilactobacillus sakei subsp. sakei 23K

47.647

100

0.509
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

65.409

0.377

Multiple sequence alignment