Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ATM98_RS08280 Genome accession   NZ_CP013651
Coordinates   1697759..1699741 (+) Length   660 a.a.
NCBI ID   WP_048691637.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692759..1704741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS08260 (ATM98_08260) - 1694470..1695138 (+) 669 WP_061564681.1 fructose-6-phosphate aldolase -
  ATM98_RS08265 (ATM98_08265) - 1695153..1696244 (+) 1092 WP_061564682.1 glycerol dehydrogenase -
  ATM98_RS09600 - 1696455..1696595 (+) 141 WP_125389288.1 bacteriocin -
  ATM98_RS08270 (ATM98_08270) - 1696657..1696878 (+) 222 WP_048691632.1 hypothetical protein -
  ATM98_RS08275 (ATM98_08275) - 1696897..1697571 (+) 675 WP_048691634.1 type II CAAX endopeptidase family protein -
  ATM98_RS08280 (ATM98_08280) amiA3 1697759..1699741 (+) 1983 WP_048691637.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS08285 (ATM98_08285) leuS 1700025..1702526 (+) 2502 WP_061564683.1 leucine--tRNA ligase -
  ATM98_RS08290 (ATM98_08290) - 1702694..1703386 (+) 693 WP_048788718.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73225.01 Da        Isoelectric Point: 4.8013

>NTDB_id=163431 ATM98_RS08280 WP_048691637.1 1697759..1699741(+) (amiA3) [Streptococcus sp. A12]
MKKGKLLLATGALLLSVSALVACSQGGKSSSSGEKVFSYVYTTDPDTLDYSLSNKQSTSEFTGNAEDGLLEVDQYGNLIS
SLAKDWSVSKDGLTYTYKLRKGVKWVTAEGEEFGEVKAQDFVTGLQHAADKKSQALYLVQKSVKGLDDYVSGKSKDFSTV
GVKAIDDYTVEYTLNQPESFWNSKTTMGILMPVNKEFLDSKGDDYGQGTNPSSILYCGPYLIKSITSKSVVTLEKNPSYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDFTVARVFPNGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQAYEITT
KTTDAQKSSTKKAILNKDFRQAVLFAFNRQAYVAQANGEASADKVIRNTFVPPSFVQIDGKEFGNSVEKYLGEHGEEWQG
VSVTDGKDTLYNPNKAKEEFAKAKTVLQSQGVEFPIHLDLPVASTYTVGVKQAQSFKQSIESTLGSENVVIDLKMVSEDD
LQRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYLDITNSKTGENANAYFGFDAGTNNAAAKEAGFDEYDQLIEDAHNET
KDVNARYEKYAKAQAWLTDSALLIPIHSDGASPGVRKTVPYSAAFAWTGHKGQSFNYKYLELQDKVLTAKEYDEAREQWK
KEKEESNKKAQKELESHVED

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=163431 ATM98_RS08280 WP_048691637.1 1697759..1699741(+) (amiA3) [Streptococcus sp. A12]
ATGAAAAAAGGGAAGCTACTCTTAGCCACCGGCGCTCTACTTTTGTCTGTAAGCGCACTGGTAGCCTGCTCACAAGGAGG
GAAATCTTCAAGTTCGGGTGAAAAAGTTTTTAGCTATGTTTACACTACTGATCCAGATACATTAGATTATTCTCTGTCCA
ATAAGCAATCAACTTCAGAATTTACAGGAAATGCTGAAGATGGCTTATTAGAAGTGGATCAGTATGGGAACTTAATTTCA
TCTCTTGCTAAGGATTGGTCTGTCTCAAAGGATGGTTTGACATACACTTATAAGCTCCGTAAAGGGGTTAAATGGGTAAC
CGCTGAGGGGGAAGAATTCGGAGAAGTTAAGGCTCAAGACTTTGTGACGGGGCTTCAACATGCTGCGGATAAAAAGTCTC
AAGCTCTTTACTTGGTCCAGAAGTCAGTGAAAGGATTGGATGATTATGTATCTGGAAAATCCAAAGATTTCTCTACTGTT
GGAGTCAAGGCTATTGATGATTATACCGTTGAGTATACGTTGAATCAGCCTGAAAGTTTCTGGAATTCTAAAACCACCAT
GGGCATTTTGATGCCAGTTAATAAAGAATTCTTAGATTCTAAAGGGGATGACTACGGTCAAGGCACTAACCCTTCTAGTA
TTCTTTATTGTGGCCCATACTTGATTAAATCCATCACATCTAAATCTGTTGTGACCCTTGAAAAAAATCCTTCTTATTGG
GATGCTGATAATGTAAAAATTTCTAAGGTCAAGCTAACCTATTATGATGGACAAGATTCAGAATCTTTGATTCGTGGCTT
TGATAACGGAGACTTTACGGTTGCCCGTGTCTTTCCGAATGGTTCCAACTATAAGAGTGTAGAGAAGAAACACAAAGATG
ACATCGTCTTTAGTGACCAAGGATCTTCTACTTATAACTTGTCCTTCAATATTGACCGTCAAGCTTATGAGATTACGACG
AAGACGACAGATGCTCAAAAGAGCTCAACCAAGAAAGCAATCTTGAATAAGGACTTCCGTCAAGCAGTCTTGTTTGCATT
TAATCGTCAGGCATATGTAGCTCAAGCTAATGGTGAGGCATCTGCCGATAAGGTTATTCGAAATACTTTTGTTCCACCTA
GCTTTGTTCAAATTGATGGAAAAGAATTTGGTAACTCGGTAGAAAAATATCTAGGAGAACATGGGGAAGAATGGCAAGGA
GTATCTGTTACAGATGGAAAAGATACTCTTTATAATCCAAATAAGGCAAAAGAAGAATTTGCTAAGGCTAAAACAGTGCT
TCAAAGTCAAGGAGTTGAATTCCCAATTCATTTGGATCTTCCAGTAGCATCAACTTATACTGTAGGCGTTAAACAGGCCC
AATCTTTTAAACAATCGATTGAATCAACCCTAGGGTCAGAAAATGTTGTTATCGACCTAAAAATGGTTTCTGAGGATGAT
CTTCAACGAGTGACCTACTTTGCTGAAAATGCTTCTCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGGGACCAGA
CTATACCGATCCATCTTCTTACCTAGATATCACAAACTCTAAGACGGGTGAAAATGCCAATGCCTACTTTGGATTTGATG
CGGGTACCAATAATGCCGCAGCCAAAGAAGCTGGTTTTGATGAATATGATCAATTGATCGAAGATGCGCACAATGAAACC
AAAGATGTCAATGCCCGCTATGAAAAATATGCTAAGGCTCAGGCTTGGTTGACAGATAGTGCCCTCTTGATCCCGATTCA
TTCAGATGGTGCCTCTCCAGGTGTGCGTAAGACAGTTCCATACTCAGCTGCCTTTGCTTGGACAGGACACAAGGGTCAAT
CCTTCAACTACAAGTACTTGGAATTGCAAGACAAAGTCTTGACAGCCAAAGAGTACGATGAAGCGCGTGAACAATGGAAG
AAAGAAAAAGAAGAATCCAATAAGAAAGCTCAAAAAGAACTAGAAAGTCACGTAGAAGACTAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.917

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.766

100

0.548
  amiA Streptococcus salivarius strain HSISS4

54.848

100

0.548

Multiple sequence alignment