Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ATM98_RS06925 Genome accession   NZ_CP013651
Coordinates   1451697..1452458 (+) Length   253 a.a.
NCBI ID   WP_048690428.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446697..1457458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS06900 (ATM98_06900) comE/comE2 1447206..1447958 (-) 753 WP_048690420.1 response regulator transcription factor Regulator
  ATM98_RS09765 - 1447959..1449284 (-) 1326 WP_065426966.1 GHKL domain-containing protein -
  ATM98_RS09280 - 1449284..1449415 (-) 132 WP_082161867.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  ATM98_RS06915 (ATM98_06915) rlmH 1449772..1450251 (-) 480 WP_048690423.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ATM98_RS06920 (ATM98_06920) htrA 1450453..1451631 (+) 1179 WP_061564541.1 S1C family serine protease Regulator
  ATM98_RS06925 (ATM98_06925) spo0J 1451697..1452458 (+) 762 WP_048690428.1 ParB/RepB/Spo0J family partition protein Regulator
  ATM98_RS06930 (ATM98_06930) dnaA 1452709..1454079 (+) 1371 WP_048690429.1 chromosomal replication initiator protein DnaA -
  ATM98_RS06935 (ATM98_06935) dnaN 1454240..1455376 (+) 1137 WP_006595327.1 DNA polymerase III subunit beta -
  ATM98_RS06940 (ATM98_06940) - 1455440..1455631 (+) 192 WP_061564542.1 DUF951 family protein -
  ATM98_RS06945 (ATM98_06945) - 1455667..1456161 (-) 495 WP_061564543.1 DUF1307 domain-containing protein -
  ATM98_RS06950 (ATM98_06950) ychF 1456321..1457436 (+) 1116 WP_045762398.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29362.99 Da        Isoelectric Point: 9.0983

>NTDB_id=163417 ATM98_RS06925 WP_048690428.1 1451697..1452458(+) (spo0J) [Streptococcus sp. A12]
MEKIDIIDVKQIRTNPFQPRQTFVQEKLEELAASIKENGLIQPIIVRKSPIVGYELLAGERRYRAAQMAGFKEIPAIIRD
LSDDDMIKQAIIENLQREDLNPIEEAESYQHLIDKGATHEEIAQFMGKSRPYISNMVRLLHLSPIVKEAIKNDQISQGHA
RILVPLKEDLQIYWLERTLKEGLSVRSLEEKVGQKKKRPSKKEKELFLAQEENRLKKMLGTEVEIRLTKQEKGSIHISFN
NLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=163417 ATM98_RS06925 WP_048690428.1 1451697..1452458(+) (spo0J) [Streptococcus sp. A12]
ATGGAAAAAATTGATATTATTGACGTAAAGCAAATACGAACCAATCCTTTTCAACCTCGTCAAACCTTTGTACAAGAAAA
ATTAGAAGAACTCGCAGCTTCAATCAAAGAAAATGGATTAATCCAGCCCATTATTGTTCGAAAATCTCCTATTGTTGGTT
ATGAACTACTTGCTGGAGAAAGACGCTACCGAGCAGCTCAAATGGCTGGTTTCAAAGAAATCCCTGCGATTATAAGAGAC
TTATCAGATGATGACATGATCAAACAAGCCATTATCGAAAATTTACAAAGGGAAGATTTGAATCCAATTGAAGAGGCTGA
ATCCTACCAACATCTTATTGATAAAGGGGCTACCCATGAAGAAATTGCACAATTTATGGGAAAATCTCGTCCTTACATCA
GCAATATGGTCCGTTTACTTCATCTCTCACCAATTGTCAAAGAAGCCATCAAAAATGATCAAATTTCACAAGGACATGCC
CGCATTTTAGTTCCTTTAAAAGAAGATCTACAAATCTATTGGTTGGAACGAACTCTGAAAGAAGGGCTAAGCGTTCGTAG
TTTGGAAGAAAAGGTTGGTCAAAAAAAGAAAAGGCCAAGTAAAAAAGAGAAAGAACTCTTTTTAGCACAGGAAGAAAACA
GATTAAAAAAGATGCTGGGAACCGAAGTAGAAATCCGTCTGACAAAACAAGAAAAAGGTAGTATTCATATTTCATTTAAC
AACCTTGATGAATACCAACGAATTATTAACAGTCTCAAATGA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(145-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.988

100

0.51

Multiple sequence alignment