Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATM98_RS05160 Genome accession   NZ_CP013651
Coordinates   1052467..1052961 (-) Length   164 a.a.
NCBI ID   WP_061564306.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1047467..1057961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS05140 (ATM98_05145) - 1049825..1050769 (+) 945 WP_048691141.1 magnesium transporter CorA family protein -
  ATM98_RS05145 (ATM98_05150) - 1050798..1051472 (+) 675 WP_048691143.1 DUF1129 family protein -
  ATM98_RS05150 (ATM98_05155) - 1051507..1052028 (-) 522 WP_061564305.1 GNAT family N-acetyltransferase -
  ATM98_RS05155 (ATM98_05160) rpsR 1052186..1052425 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  ATM98_RS05160 (ATM98_05165) ssb 1052467..1052961 (-) 495 WP_061564306.1 single-stranded DNA-binding protein Machinery gene
  ATM98_RS05165 (ATM98_05170) rpsF 1052988..1053278 (-) 291 WP_006595679.1 30S ribosomal protein S6 -
  ATM98_RS05170 (ATM98_05175) - 1053556..1054608 (+) 1053 WP_061564307.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  ATM98_RS05175 (ATM98_05180) - 1054595..1055497 (+) 903 WP_061564308.1 phosphodiester glycosidase family protein -
  ATM98_RS05180 (ATM98_05185) - 1055478..1055894 (+) 417 WP_082781662.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17891.67 Da        Isoelectric Point: 4.7079

>NTDB_id=163407 ATM98_RS05160 WP_061564306.1 1052467..1052961(-) (ssb) [Streptococcus sp. A12]
MINNVVLVGRMTRDAELRYTPQNQAVATFSLAVNRNFKNQNGERDADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRANREGQAGGGYASAGGFAGNAAPSFGVSEPSNATPNFGRDDNPFGANPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=163407 ATM98_RS05160 WP_061564306.1 1052467..1052961(-) (ssb) [Streptococcus sp. A12]
ATGATTAACAATGTTGTACTTGTAGGTCGTATGACTCGAGATGCTGAACTTCGTTATACCCCTCAAAATCAGGCTGTTGC
GACATTCTCACTCGCGGTTAACCGTAATTTTAAAAACCAAAATGGTGAACGAGATGCGGACTTTATCAACTGTGTGATTT
GGCGTCAACAAGCTGAAAATTTAGCAAATTGGGCTAAAAAGGGTGCCTTAGTTGGGATTACAGGTCGTATCCAGACTCGT
AATTATGAGAATCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCGGACAGCTTCCAATTGTTGGAAAGCCGCGC
GAATCGTGAAGGACAAGCAGGTGGTGGTTATGCTTCAGCTGGAGGATTTGCAGGAAATGCAGCTCCAAGCTTTGGAGTAT
CTGAACCATCAAACGCAACACCAAACTTTGGACGTGATGACAATCCATTCGGAGCTAATCCAATGGACATCTCGGATGAC
GATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.647

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment