Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ATM98_RS03630 Genome accession   NZ_CP013651
Coordinates   732806..734806 (-) Length   666 a.a.
NCBI ID   WP_061564133.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 727806..739806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS03620 (ATM98_03620) trxA 729212..729526 (-) 315 WP_006595996.1 thioredoxin -
  ATM98_RS03625 (ATM98_03625) - 729620..732691 (-) 3072 WP_061564132.1 CocE/NonD family hydrolase -
  ATM98_RS03630 (ATM98_03630) amiA3 732806..734806 (-) 2001 WP_061564133.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS03635 (ATM98_03635) trpA 734916..735701 (-) 786 WP_061564134.1 tryptophan synthase subunit alpha -
  ATM98_RS03640 (ATM98_03640) trpB 735704..736906 (-) 1203 WP_061564135.1 tryptophan synthase subunit beta -
  ATM98_RS03645 (ATM98_03645) - 736903..737484 (-) 582 WP_061564136.1 phosphoribosylanthranilate isomerase -
  ATM98_RS03650 (ATM98_03650) trpC 737471..738238 (-) 768 WP_061564137.1 indole-3-glycerol phosphate synthase TrpC -
  ATM98_RS03655 (ATM98_03655) trpD 738235..739239 (-) 1005 WP_061564138.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 73996.24 Da        Isoelectric Point: 4.7078

>NTDB_id=163399 ATM98_RS03630 WP_061564133.1 732806..734806(-) (amiA3) [Streptococcus sp. A12]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTADDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFKNVGIKAVDDHTLQVTLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTSKTTDEEKSSTKKALLNKDFRQAISFAFDREAYAAQANGKDGASKLIRNLYIPPTFVQADGKTFGEMVKSELVTY
GDEWKDANLDDGQNGLYNAKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESALGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVT
EAGAETQDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKDHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=163399 ATM98_RS03630 WP_061564133.1 732806..734806(-) (amiA3) [Streptococcus sp. A12]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCTGGTGGTTC
TAAATCATCAAGCTCAAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCTTACGTCTATGAGACTGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCACGAAATCACAGGAAACTTGATCGATGGTTTGTTTGAAAACGACAAG
TATGGGAATTTGATTCCTTCGCTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCCAAATGGTACGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGATGACTTCGTTGCAGGGATTAAGTATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAACTCTATCAAGGGCTTGAATGATTATGTTGAAGGTAAGACT
TCAGACTTCAAAAATGTAGGCATTAAAGCGGTCGATGATCATACCCTTCAAGTCACTTTGAACCAGGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGAATCACGTTCCCTATCAACGAGAAATTCGTTGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACGAGCTCTCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAAGACAATGTTCACATCACAGATGTTAAGCTAGAATACTATGATGGTCAAGACCAAAG
TAAATTGGCGAACTCGTTTGAGGACAACGCTCTTAGCCTTGCTAAATTGTTCCCAACAGGACCTGGGTTCACAGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACTCCACAAGATGCCAGCACCTTCGTTATCGGTGTCAATATCGATCGTCAG
TCATACAAGTACACTTCAAAAACAACTGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTTCCGTCA
AGCGATCAGCTTTGCCTTTGACCGTGAAGCCTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGCAAGACCTTCGGTGAGATGGTTAAATCTGAGTTGGTGACGTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAAAATGGTCTTTACAACGCTAAACAAGCCAAAGAAGAGTTTGC
GAAAGCGAAATCTGCACTTGAAGCAGATGGTGTGAAATTCCCAATCCACTTGGATATGCCAGTAGACCAAACGACTCAAT
CGAAGGTTCAACGTGCTCAATCCTTCAAACAATCAGTTGAAAGTGCGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGATCTCTTGAACGTGACCCTCTTTGCTGCTAAGGCAGAAGACGAAGACTGGGATATCTCAGACAA
CGTTGGATGGAGCCCAGACTATCAAGATCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAACACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAATGAGGCAGCTAAGAAAGTTGGTCTCTACGACTTTGAGAAGATGGTAACA
GAAGCAGGAGCTGAAACACAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACAGATAGTGC
TTTGGTCATCCCAACCACTTCTAAGACTGGTCGTCCATTCTTGACTCGTGTCGTACCATTCTCAGCACCATTTGGCTGGA
CTGGTGGTAAAGGGAAAGACAACGTTGTCTACAAAGGTATGGAACTTCAAGACAAGGCTGTAACAACCGAAGACTACAAC
AAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAGATCACGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.522

100

0.566
  amiA3 Streptococcus thermophilus LMG 18311

56.372

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.222

100

0.563

Multiple sequence alignment