Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ATM98_RS00590 Genome accession   NZ_CP013651
Coordinates   106061..108025 (-) Length   654 a.a.
NCBI ID   WP_061563699.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 101061..113025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS00570 (ATM98_00570) - 102150..102413 (-) 264 WP_006596747.1 SemiSWEET family transporter -
  ATM98_RS00575 (ATM98_00575) - 102700..102957 (+) 258 WP_003011864.1 SemiSWEET family transporter -
  ATM98_RS00580 (ATM98_00580) - 103133..103900 (+) 768 WP_048715480.1 ABC transporter ATP-binding protein -
  ATM98_RS00585 (ATM98_00585) - 103893..105902 (+) 2010 WP_061563698.1 FtsX-like permease family protein -
  ATM98_RS00590 (ATM98_00590) amiA 106061..108025 (-) 1965 WP_061563699.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS00595 (ATM98_00595) - 108261..108587 (+) 327 WP_061563700.1 PadR family transcriptional regulator -
  ATM98_RS00600 (ATM98_00600) - 108584..109384 (+) 801 WP_061563701.1 hypothetical protein -
  ATM98_RS00605 (ATM98_00605) - 109381..110211 (+) 831 WP_061563702.1 hypothetical protein -
  ATM98_RS00610 (ATM98_00610) - 110612..111217 (+) 606 WP_061563703.1 DUF3290 family protein -
  ATM98_RS00615 (ATM98_00615) - 111369..111638 (+) 270 WP_061563704.1 DUF4177 domain-containing protein -
  ATM98_RS00620 (ATM98_00620) - 111882..112850 (+) 969 WP_061564795.1 Abi family protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72810.86 Da        Isoelectric Point: 4.6994

>NTDB_id=163387 ATM98_RS00590 WP_061563699.1 106061..108025(-) (amiA) [Streptococcus sp. A12]
MKKSKLAFLAGVTVASALFLASCGSSSKSSQTNTYSYVFSTDPDSLNYLLSNRSTTSDVTTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADNKSDALYLVQNSVAGLDDYVTGKNTDFSKVGV
KAVDDHTLQYTLAQPESFWNSKLTTSTMMPVNEKFLKSAGKDFGSVKPSGILYNGPYYLKSFTSKSLMEFTKNKNYYDKD
NVKIDDIKLTYFDGSDQDYLARNFSDGNLTTARLFPTSSTFSTIEKKFKDNIVYSPQDATVYYVYFNVNRQNYGHTEKTT
DDQKNQTKTALQNKNFRQAINFALDRTSLSAQSNGKDGASKTLRTLLVPPTFVQVNNKDFGTVVEEKLAATGDDWKDVSL
ADAQDSMFNADKAKAQFAKAKEELQAQGVQFPIHIDYVVDQSSASIVQQADSMKDSIEKTLGKENVVVDVQKLSTEDADN
ATYFAQTPDQKDFDMDIGGWGPDFQDPSTYLDIFNPVDGSALAGMGINPATDQALIEKLGLNEYKQLLDDANAEQLDTNA
RYEKYAVAQAWLTDNAFALPVYSKGAVPSITKIKPFTKAFSLIGIKDGASYYKYMELQSDTVTTADYDKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=163387 ATM98_RS00590 WP_061563699.1 106061..108025(-) (amiA) [Streptococcus sp. A12]
ATGAAAAAATCTAAACTAGCTTTCCTTGCAGGTGTCACGGTTGCTTCAGCCCTGTTCCTTGCTTCATGTGGATCATCTTC
AAAATCTTCTCAGACAAACACTTACTCATACGTGTTTAGTACTGATCCAGATTCTTTGAACTACCTCCTTTCAAACCGTT
CTACAACAAGTGACGTTACCACTAACTTGGTTGATGGATTGTTTGAAAATGACCAATATGGTAATCTCGTCCCTGCACTA
GCGGAAGATTGGTCTGTCTCTAAAGACGGATTAACCTACACTTATAAACTCCGTAAAGATGCAAAATGGTATGACTCTGA
AGGAAACGAATATGCAGATGTCACTGCACAGGACTTCGTCACTTCTCTGAAATACGTAGCGGACAACAAGTCAGATGCCC
TCTACTTGGTTCAAAACTCAGTAGCCGGCCTGGATGACTATGTCACTGGTAAAAATACAGATTTCTCTAAAGTTGGAGTC
AAAGCCGTTGACGACCATACCCTTCAATACACCTTGGCTCAACCTGAGTCTTTCTGGAATTCTAAATTGACGACTTCAAC
CATGATGCCTGTCAATGAAAAATTCCTCAAATCAGCAGGAAAAGACTTCGGTAGTGTCAAACCTTCTGGAATTCTCTATA
ACGGTCCTTACTATTTGAAATCCTTCACTTCAAAATCGTTGATGGAGTTCACTAAGAACAAGAACTACTACGACAAAGAC
AATGTAAAGATCGATGATATCAAATTGACCTACTTCGATGGTTCTGACCAAGACTACCTTGCTCGTAACTTCTCTGATGG
AAACTTGACCACAGCGCGTCTCTTCCCAACGAGCTCAACTTTCAGTACGATTGAGAAAAAATTCAAGGACAATATCGTTT
ATTCACCGCAAGATGCGACTGTCTACTATGTCTACTTCAACGTAAACCGTCAAAACTACGGTCATACTGAGAAAACAACA
GACGACCAGAAGAACCAAACCAAAACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCATCAACTTTGCCCTTGATCGTAC
TTCTCTAAGTGCCCAATCAAACGGGAAAGATGGGGCTAGCAAAACTCTTCGTACGCTTCTTGTACCTCCAACATTTGTGC
AAGTAAACAACAAAGACTTCGGTACTGTTGTTGAAGAAAAACTTGCTGCAACAGGAGATGATTGGAAGGATGTCAGCCTA
GCTGATGCGCAAGATAGCATGTTCAATGCGGACAAGGCTAAAGCACAATTTGCTAAAGCCAAAGAAGAGCTCCAAGCACA
AGGTGTTCAATTCCCAATCCACATCGACTATGTAGTTGACCAATCTTCTGCTAGCATTGTGCAACAAGCTGATTCAATGA
AAGACTCCATCGAAAAAACATTAGGAAAAGAAAATGTTGTCGTGGATGTTCAGAAATTGTCTACGGAAGATGCGGACAAC
GCAACCTACTTCGCCCAAACACCAGACCAAAAAGACTTTGATATGGATATCGGTGGTTGGGGACCTGACTTCCAAGACCC
ATCAACTTACTTGGATATCTTCAATCCAGTAGATGGTTCAGCCTTAGCAGGTATGGGGATCAATCCAGCAACTGACCAAG
CCCTTATCGAAAAACTTGGTTTGAACGAGTATAAACAACTATTGGATGATGCCAATGCAGAACAATTGGATACCAATGCT
CGTTACGAAAAATATGCTGTTGCTCAAGCTTGGTTGACAGACAATGCCTTTGCCCTTCCTGTCTACTCTAAGGGTGCTGT
CCCTTCTATCACGAAGATCAAACCATTTACAAAAGCCTTCTCCTTGATTGGTATCAAAGACGGAGCTAGCTACTACAAGT
ACATGGAATTACAAAGTGATACAGTCACAACGGCTGACTACGACAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.255

100

0.546
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.541

Multiple sequence alignment