Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AT730_RS00260 Genome accession   NZ_CP013484
Coordinates   54875..57130 (+) Length   751 a.a.
NCBI ID   WP_064367970.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ATCC 33787     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 49875..62130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT730_RS00235 (AT730_00230) - 50234..50803 (-) 570 WP_017634743.1 hypothetical protein -
  AT730_RS00240 (AT730_00235) lolC 51053..52261 (+) 1209 WP_064367967.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AT730_RS00245 (AT730_00240) lolD 52254..52961 (+) 708 WP_025766931.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AT730_RS00250 (AT730_00245) lolE 52964..54208 (+) 1245 WP_064367969.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AT730_RS00255 (AT730_00250) - 54357..54866 (-) 510 WP_005387834.1 DUF2062 domain-containing protein -
  AT730_RS00260 (AT730_00255) comEC 54875..57130 (+) 2256 WP_064367970.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AT730_RS00265 (AT730_00260) msbA 57162..58910 (+) 1749 WP_017820018.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AT730_RS00270 (AT730_00265) lpxK 58916..59923 (+) 1008 WP_017820019.1 tetraacyldisaccharide 4'-kinase -
  AT730_RS00275 (AT730_00270) - 59904..60083 (+) 180 WP_005378451.1 Trm112 family protein -
  AT730_RS00280 (AT730_00275) kdsB 60083..60838 (+) 756 WP_064367973.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84332.16 Da        Isoelectric Point: 7.8762

>NTDB_id=162986 AT730_RS00260 WP_064367970.1 54875..57130(+) (comEC) [Vibrio alginolyticus strain ATCC 33787]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSEEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQRGGWKERLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEVIAKPLWHSVDWSLQPLSTSIQYAIGSWQPISMEMTMLVMAIVVCLIFQRFMSQYAWYLLL
GIVISIKLASEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHFDNDH
AGGRFFIEDAFSPQRKLSSQFFIGYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVVLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAESVVASYRKLGITWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=162986 AT730_RS00260 WP_064367970.1 54875..57130(+) (comEC) [Vibrio alginolyticus strain ATCC 33787]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCGGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCGATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGACGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTGAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCGTACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGAGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAGTGATAGCGAAGCCTCTGTGGCA
TTCGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAATAGGTTCTTGGCAACCTATTAGCATGGAAA
TGACAATGCTGGTTATGGCGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGCTTGCATCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTTCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGGATATGAGCC
TTGCACTAGAGGTGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGGTGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATCGAGGCGGTGAGCCCGAGTGTGGCGGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAGTGTCGTTGCTTCATACCGAAAGCTTGGCATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

68.883

100

0.69
  comEC Vibrio campbellii strain DS40M4

65.426

100

0.655
  comEC Vibrio cholerae strain A1552

43.634

100

0.438

Multiple sequence alignment