Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   A6M04_RS08120 Genome accession   NZ_CP016668
Coordinates   1585558..1586007 (-) Length   149 a.a.
NCBI ID   WP_002221685.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25472     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580558..1591007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M04_RS08095 (A6M04_08095) - 1581844..1582899 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  A6M04_RS13615 - 1583305..1583430 (-) 126 Protein_1512 IS5/IS1182 family transposase -
  A6M04_RS08110 (A6M04_08110) - 1583520..1584485 (+) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  A6M04_RS12600 - 1584511..1584861 (-) 351 Protein_1514 IS5/IS1182 family transposase -
  A6M04_RS14695 (A6M04_08115) - 1585200..1585468 (+) 269 Protein_1515 5'-nucleotidase -
  A6M04_RS08120 (A6M04_08120) comP 1585558..1586007 (-) 450 WP_002221685.1 type IV pilin protein Machinery gene
  A6M04_RS08125 (A6M04_08125) comE 1586095..1586559 (-) 465 WP_162818945.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16848.83 Da        Isoelectric Point: 9.7951

>NTDB_id=162709 A6M04_RS08120 WP_002221685.1 1585558..1586007(-) (comP) [Neisseria meningitidis strain M25472]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYIEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=162709 A6M04_RS08120 WP_002221685.1 1585558..1586007(-) (comP) [Neisseria meningitidis strain M25472]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATATTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483