Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   A6L52_RS05395 Genome accession   NZ_CP016662
Coordinates   1005051..1005500 (+) Length   149 a.a.
NCBI ID   WP_002221685.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23413     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000051..1010500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L52_RS05390 (A6L52_05390) comE 1004499..1004963 (+) 465 WP_162818945.1 helix-hairpin-helix domain-containing protein Machinery gene
  A6L52_RS05395 (A6L52_05395) comP 1005051..1005500 (+) 450 WP_002221685.1 type IV pilin protein Machinery gene
  A6L52_RS05400 (A6L52_05400) - 1005590..1005984 (-) 395 Protein_1012 5'-nucleotidase -
  A6L52_RS12120 - 1006197..1006547 (+) 351 Protein_1013 IS5/IS1182 family transposase -
  A6L52_RS05405 (A6L52_05405) - 1006573..1007538 (-) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  A6L52_RS13490 - 1007628..1007753 (+) 126 Protein_1015 IS5/IS1182 family transposase -
  A6L52_RS05420 (A6L52_05420) - 1008159..1009214 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16848.83 Da        Isoelectric Point: 9.7951

>NTDB_id=162283 A6L52_RS05395 WP_002221685.1 1005051..1005500(+) (comP) [Neisseria meningitidis strain M23413]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYIEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=162283 A6L52_RS05395 WP_002221685.1 1005051..1005500(+) (comP) [Neisseria meningitidis strain M23413]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATATTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483