Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ATY38_RS08445 Genome accession   NZ_CP013341
Coordinates   1867151..1867957 (+) Length   268 a.a.
NCBI ID   WP_062558914.1    Uniprot ID   -
Organism   Nitrosomonas ureae strain Nm10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862151..1872957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY38_RS08425 (ATY38_08415) - 1862772..1863437 (+) 666 WP_062558910.1 CAAX prenyl protease-related protein -
  ATY38_RS08430 (ATY38_08420) - 1863476..1864186 (-) 711 WP_062558911.1 flagellar brake protein -
  ATY38_RS08435 (ATY38_08425) - 1864677..1866059 (+) 1383 WP_062558912.1 porin -
  ATY38_RS08440 (ATY38_08430) rluD 1866136..1867152 (-) 1017 WP_062558913.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ATY38_RS08445 (ATY38_08435) comL 1867151..1867957 (+) 807 WP_062558914.1 outer membrane protein assembly factor BamD Machinery gene
  ATY38_RS08450 (ATY38_08440) - 1867986..1868429 (-) 444 WP_062558915.1 universal stress protein -
  ATY38_RS08455 (ATY38_08445) - 1868534..1869409 (-) 876 WP_062558916.1 alpha/beta hydrolase -
  ATY38_RS08460 (ATY38_08450) - 1869431..1869979 (-) 549 WP_062558917.1 FecR domain-containing protein -
  ATY38_RS08465 (ATY38_08455) - 1870122..1871120 (+) 999 WP_062558918.1 hypothetical protein -
  ATY38_RS08470 (ATY38_08460) - 1871314..1872078 (-) 765 WP_235590225.1 response regulator -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30841.08 Da        Isoelectric Point: 5.4472

>NTDB_id=162162 ATY38_RS08445 WP_062558914.1 1867151..1867957(+) (comL) [Nitrosomonas ureae strain Nm10]
MLHSLALFLVLGLSACGLLPDRTDDQEDWSANKFYSEAKEKLNDGSYPAAIKLYETLESRYPYGRIAQQAQLEVAYAHYK
NDEPASAIAAADRFIKLHPNHANVDYAYYIKGLANFNEGWGMLGFLLKGPFKQDMSERDPKASYESFEIFKELVTRFPES
KYAADSRQRMAYLLNLLAMGEIHTARYYMKRKAYIAAANRAQNAVKEYPPTPATEEALYIMIKAYEALEMYDLRDDAERV
MRINFPDSIFLAELPEVGAKAWWEFWKN

Nucleotide


Download         Length: 807 bp        

>NTDB_id=162162 ATY38_RS08445 WP_062558914.1 1867151..1867957(+) (comL) [Nitrosomonas ureae strain Nm10]
ATGTTACATAGTTTAGCCTTATTTCTGGTTTTAGGGTTGTCAGCATGCGGTTTGTTGCCGGATCGTACAGATGATCAAGA
GGACTGGTCTGCCAATAAGTTTTATTCGGAAGCAAAAGAAAAATTGAATGATGGTAGTTACCCTGCGGCTATTAAGCTCT
ATGAAACTTTAGAATCACGCTATCCTTATGGGAGGATTGCTCAACAAGCACAGCTTGAGGTTGCTTACGCACACTATAAA
AACGATGAGCCTGCTTCGGCAATCGCAGCTGCTGATCGATTTATTAAATTGCATCCAAATCATGCGAATGTAGATTATGC
ATATTATATCAAGGGTTTGGCAAATTTTAATGAAGGTTGGGGGATGCTGGGTTTTTTGCTGAAGGGACCATTTAAACAGG
ATATGAGTGAGCGAGATCCCAAAGCCTCATATGAGTCATTTGAAATTTTTAAGGAATTGGTTACCCGTTTCCCGGAAAGT
AAATATGCGGCAGACTCGAGGCAGCGTATGGCGTATTTGCTTAATTTACTTGCAATGGGTGAAATTCATACGGCACGATA
TTACATGAAACGTAAGGCTTATATTGCAGCTGCTAATCGGGCGCAAAATGCCGTCAAGGAGTATCCTCCTACACCAGCGA
CGGAAGAGGCCTTGTATATAATGATCAAAGCGTATGAAGCACTGGAAATGTATGATTTACGGGACGATGCAGAACGTGTG
ATGCGAATTAATTTCCCGGATAGCATTTTTCTCGCGGAATTACCCGAGGTGGGTGCTAAAGCATGGTGGGAGTTTTGGAA
AAACTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(30-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.679

98.881

0.481
  comL Neisseria gonorrhoeae MS11

47.547

98.881

0.47

Multiple sequence alignment