Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NPD1_RS20860 Genome accession   NZ_CP013296
Coordinates   4015965..4017023 (-) Length   352 a.a.
NCBI ID   WP_003388318.1    Uniprot ID   A0A0A2HDB4
Organism   Clostridium botulinum strain CDC_54064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4010965..4022023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD1_RS20835 (NPD1_3872) - 4011106..4011462 (-) 357 WP_004440581.1 SMR family transporter -
  NPD1_RS20840 (NPD1_3873) - 4011459..4012742 (-) 1284 WP_004440270.1 glycosyltransferase family 39 protein -
  NPD1_RS20845 (NPD1_3874) - 4012761..4013627 (-) 867 WP_004440805.1 decaprenyl-phosphate phosphoribosyltransferase -
  NPD1_RS20850 (NPD1_3875) - 4013790..4014050 (-) 261 WP_003362540.1 stage V sporulation protein S -
  NPD1_RS20855 (NPD1_3876) rny 4014189..4015730 (-) 1542 WP_004440657.1 ribonuclease Y -
  NPD1_RS20860 (NPD1_3877) recA 4015965..4017023 (-) 1059 WP_003388318.1 recombinase RecA Machinery gene
  NPD1_RS20865 (NPD1_3878) pgsA 4017171..4017755 (-) 585 WP_003362543.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NPD1_RS20870 (NPD1_3879) rimO 4017739..4019076 (-) 1338 WP_004440536.1 30S ribosomal protein S12 methylthiotransferase RimO -
  NPD1_RS20875 (NPD1_3880) - 4019171..4021447 (-) 2277 WP_012704795.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38244.84 Da        Isoelectric Point: 6.5208

>NTDB_id=161600 NPD1_RS20860 WP_003388318.1 4015965..4017023(-) (recA) [Clostridium botulinum strain CDC_54064]
MANKVNPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSILNVESISTGSLDLDIALGIGGVPRGRIIEIFGPESSGKTTVAL
HILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQI
LGNRTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGRENAKQFLKDNMNIAL
EIENTIRKKHDLPVVDAKNLNIENKKEDNKEG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=161600 NPD1_RS20860 WP_003388318.1 4015965..4017023(-) (recA) [Clostridium botulinum strain CDC_54064]
GTGGCAAATAAAGTTAATCCAGAAAAATTAAAAGCTATAGAAGCAGCTATGGGACAAATAGAAAAGCAATTTGGAAAAGG
TTCTATAATGAAACTTGGAGAGGATAGTATATTAAACGTAGAATCCATATCCACAGGAAGCTTAGATTTAGATATAGCAT
TAGGTATAGGGGGAGTTCCTAGAGGAAGAATAATAGAAATATTTGGACCAGAGTCCTCAGGTAAAACCACTGTAGCACTT
CATATATTAGCAGAAGCGCAAAAAATAGGTGGGGCAGCAGCTTTTATAGATGCAGAACATGCTTTAGATCCATCTTATGC
TAGAAATTTAGGTGTTGATATAGATAACCTAATAGTTTCTCAACCAGATACAGGAGAACAGGCTTTAGAGATAACAGAAG
CTTTAGTAAGATCAGGAGCAGTAGATGTTATAGTTGTAGACTCCGTAGCAGCTTTAGTTCCTAGGGCAGAAATAGAAGGA
GAAATGGGAGACTCCCATGTAGGTCTTCAAGCAAGACTTATGTCTCAAGCCCTAAGAAAATTAGCAGGATCTATAAATAA
ATCTAAGTGTGTAGCTATATTTATAAACCAATTAAGAGAAAAGGTTGGTATAATGTTTGGAAATCCAGAAACAACTCCTG
GTGGAAGAGCATTAAAATTCTATTCTTCTGTTAGACTAGATGTAAGAAGAATAGATTCTATAAAACAAGGTGATCAAATC
TTAGGTAATAGAACAAGAGTGAAAATAAATAAAAATAAAGTAGCTCCTCCATTTAAAATGGCAGAATTTGATATAATGTA
TAATGAAGGAATATCAAAGGTAGGAAATATATTAGATGTAGGTGTTAGAGAAGAGCTAGTTGACAAAAGTGGTTCTTGGT
TCTCTTATAAAGATACAAGATTAGGACAAGGAAGAGAAAATGCAAAACAATTTTTAAAAGATAATATGAATATAGCCTTA
GAGATAGAAAATACTATAAGAAAAAAACATGATTTACCAGTTGTTGATGCAAAAAACTTAAATATAGAGAATAAAAAAGA
AGACAATAAGGAAGGATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2HDB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.963

91.193

0.656
  recA Streptococcus pneumoniae Rx1

61.905

100

0.628
  recA Streptococcus pneumoniae D39

61.905

100

0.628
  recA Streptococcus pneumoniae R6

61.905

100

0.628
  recA Streptococcus pneumoniae TIGR4

61.905

100

0.628
  recA Streptococcus mitis NCTC 12261

62.216

100

0.622
  recA Latilactobacillus sakei subsp. sakei 23K

63.557

97.443

0.619
  recA Streptococcus mitis SK321

63.69

95.455

0.608
  recA Glaesserella parasuis strain SC1401

64.923

92.33

0.599
  recA Streptococcus mutans UA159

62.202

95.455

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.03

93.75

0.591
  recA Streptococcus pyogenes NZ131

62.462

94.602

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.688

90.909

0.588
  recA Neisseria gonorrhoeae MS11

64.486

91.193

0.588
  recA Neisseria gonorrhoeae strain FA1090

64.486

91.193

0.588
  recA Pseudomonas stutzeri DSM 10701

64.486

91.193

0.588
  recA Neisseria gonorrhoeae MS11

64.486

91.193

0.588
  recA Helicobacter pylori 26695

63.692

92.33

0.588
  recA Lactococcus lactis subsp. cremoris KW2

61.31

95.455

0.585
  recA Helicobacter pylori strain NCTC11637

63.077

92.33

0.582
  recA Vibrio cholerae strain A1552

64.062

90.909

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

90.909

0.582
  recA Acinetobacter baumannii D1279779

63.551

91.193

0.58
  recA Ralstonia pseudosolanacearum GMI1000

65.372

87.784

0.574
  recA Acinetobacter baylyi ADP1

62.928

91.193

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

90.909

0.554

Multiple sequence alignment