Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | APQ13_RS08655 | Genome accession | NZ_CP013237 |
| Coordinates | 1791076..1792029 (+) | Length | 317 a.a. |
| NCBI ID | WP_002263442.1 | Uniprot ID | Q8DS56 |
| Organism | Streptococcus mutans strain NG8 isolate Dental Plaque | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1786076..1797029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APQ13_RS08615 (APQ13_08595) | - | 1786842..1787225 (+) | 384 | WP_002264248.1 | DUF1033 family protein | - |
| APQ13_RS08620 (APQ13_08600) | comYA | 1787355..1788296 (+) | 942 | WP_002263435.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| APQ13_RS08625 (APQ13_08605) | comYB | 1788232..1789263 (+) | 1032 | WP_255262721.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| APQ13_RS08630 (APQ13_08610) | comYC | 1789263..1789577 (+) | 315 | WP_002263437.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| APQ13_RS08635 (APQ13_08615) | comYD | 1789564..1789968 (+) | 405 | WP_002264246.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| APQ13_RS08640 (APQ13_08620) | comYE | 1789940..1790233 (+) | 294 | WP_002263439.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| APQ13_RS08645 (APQ13_08625) | comYF | 1790220..1790654 (+) | 435 | WP_061046398.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| APQ13_RS08650 (APQ13_08630) | comYG | 1790632..1791021 (+) | 390 | WP_002263441.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| APQ13_RS08655 (APQ13_08635) | comYH | 1791076..1792029 (+) | 954 | WP_002263442.1 | class I SAM-dependent methyltransferase | Machinery gene |
| APQ13_RS08660 (APQ13_08640) | - | 1792088..1793287 (+) | 1200 | WP_002263443.1 | acetate kinase | - |
| APQ13_RS08665 (APQ13_08645) | - | 1793840..1794085 (+) | 246 | WP_002263444.1 | helix-turn-helix transcriptional regulator | - |
| APQ13_RS08670 (APQ13_08650) | - | 1794054..1794494 (+) | 441 | WP_002263445.1 | hypothetical protein | - |
| APQ13_RS08675 (APQ13_08655) | - | 1794547..1795209 (+) | 663 | WP_002266816.1 | CPBP family intramembrane glutamic endopeptidase | - |
| APQ13_RS08680 (APQ13_08660) | proC | 1795295..1796065 (-) | 771 | WP_002267840.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36272.56 Da Isoelectric Point: 5.2379
>NTDB_id=161014 APQ13_RS08655 WP_002263442.1 1791076..1792029(+) (comYH) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDIIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILAVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDIIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILAVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF
Nucleotide
Download Length: 954 bp
>NTDB_id=161014 APQ13_RS08655 WP_002263442.1 1791076..1792029(+) (comYH) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGACGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATATCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTAGCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGACGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATATCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTAGCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
100 |
100 |
1 |
| comYH | Streptococcus mutans UA140 |
99.369 |
100 |
0.994 |