Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   APQ13_RS08650 Genome accession   NZ_CP013237
Coordinates   1790632..1791021 (+) Length   129 a.a.
NCBI ID   WP_002263441.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785632..1796021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS08615 (APQ13_08595) - 1786842..1787225 (+) 384 WP_002264248.1 DUF1033 family protein -
  APQ13_RS08620 (APQ13_08600) comYA 1787355..1788296 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  APQ13_RS08625 (APQ13_08605) comYB 1788232..1789263 (+) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  APQ13_RS08630 (APQ13_08610) comYC 1789263..1789577 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  APQ13_RS08635 (APQ13_08615) comYD 1789564..1789968 (+) 405 WP_002264246.1 competence type IV pilus minor pilin ComGD Machinery gene
  APQ13_RS08640 (APQ13_08620) comYE 1789940..1790233 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  APQ13_RS08645 (APQ13_08625) comYF 1790220..1790654 (+) 435 WP_061046398.1 competence type IV pilus minor pilin ComGF Machinery gene
  APQ13_RS08650 (APQ13_08630) comYG 1790632..1791021 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  APQ13_RS08655 (APQ13_08635) comYH 1791076..1792029 (+) 954 WP_002263442.1 class I SAM-dependent methyltransferase Machinery gene
  APQ13_RS08660 (APQ13_08640) - 1792088..1793287 (+) 1200 WP_002263443.1 acetate kinase -
  APQ13_RS08665 (APQ13_08645) - 1793840..1794085 (+) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  APQ13_RS08670 (APQ13_08650) - 1794054..1794494 (+) 441 WP_002263445.1 hypothetical protein -
  APQ13_RS08675 (APQ13_08655) - 1794547..1795209 (+) 663 WP_002266816.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14954.27 Da        Isoelectric Point: 10.2940

>NTDB_id=161013 APQ13_RS08650 WP_002263441.1 1790632..1791021(+) (comYG) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MLFMKKIKAGVLLYALFMSAIFSLFLQFYLNRVVATERQNQAQLSASKAYLIADLTQDLAKDNFGQLTFNHGRSSYHKQE
GELLIKVHLTDGQSYQYRFNCVTENKEKGKFSVANKTFTKSIEKRHFQK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=161013 APQ13_RS08650 WP_002263441.1 1790632..1791021(+) (comYG) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGCTTTTCATGAAAAAAATTAAAGCAGGCGTACTTCTATATGCTCTGTTTATGTCAGCAATCTTTAGTCTTTTCTTACA
ATTTTATCTTAATCGTGTTGTAGCAACAGAGAGACAAAATCAGGCACAATTATCGGCCAGTAAAGCTTATCTTATAGCAG
ATCTAACTCAAGATTTGGCTAAAGACAACTTTGGGCAGTTGACTTTTAATCACGGAAGGTCTAGTTATCATAAACAGGAG
GGGGAACTTCTGATAAAAGTCCATTTGACAGATGGTCAGTCCTACCAATATCGTTTTAACTGTGTAACAGAAAATAAGGA
AAAAGGAAAATTTAGTGTGGCTAATAAAACTTTTACTAAATCTATAGAAAAACGTCATTTTCAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

100

100

1
  comYG Streptococcus mutans UA159

100

100

1

Multiple sequence alignment