Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   APQ13_RS00630 Genome accession   NZ_CP013237
Coordinates   108360..109361 (+) Length   333 a.a.
NCBI ID   WP_002264971.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 103360..114361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS00605 (APQ13_00605) - 103367..103885 (+) 519 WP_002289391.1 hypothetical protein -
  APQ13_RS00610 (APQ13_00610) celB 103901..105259 (+) 1359 WP_002271288.1 PTS cellobiose transporter subunit IIC -
  APQ13_RS00615 (APQ13_00615) - 105525..106295 (+) 771 WP_002268260.1 carbonic anhydrase -
  APQ13_RS00620 (APQ13_00620) - 106422..107003 (+) 582 WP_002262795.1 CDP-archaeol synthase -
  APQ13_RS00625 (APQ13_00625) - 107118..108197 (-) 1080 WP_002264970.1 M24 family metallopeptidase -
  APQ13_RS00630 (APQ13_00630) ccpA 108360..109361 (+) 1002 WP_002264971.1 catabolite control protein A Regulator
  APQ13_RS00635 (APQ13_00635) - 109509..110969 (+) 1461 WP_002264972.1 alpha-amylase -
  APQ13_RS00640 (APQ13_00640) - 111079..112077 (+) 999 WP_002264973.1 glycosyltransferase -
  APQ13_RS00645 (APQ13_00645) - 112079..113413 (+) 1335 WP_002271828.1 glycosyltransferase family 4 protein -
  APQ13_RS00650 (APQ13_00650) - 113492..113683 (+) 192 WP_002266172.1 hypothetical protein -
  APQ13_RS00655 (APQ13_00655) - 113677..114318 (+) 642 WP_002289387.1 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36647.91 Da        Isoelectric Point: 6.8583

>NTDB_id=160957 APQ13_RS00630 WP_002264971.1 108360..109361(+) (ccpA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLFAKQVDGIIFMGHHLTEKIRAEFSRARTPVVLSGTVDLEHQLPS
VNIDHSKAAQDAVALLAKHHDKIAFVSGPFIDDINGKVRLAGYKEGLKKKGLPFKEGLVFEAQYKYQEGYQLAQRVINSG
ATAAYVAEDELAAGLLNGLFAAGKKVPEDFEIITSNDSTIALYTRPNMTSISQPIYDLGAVAMRMLTKIMNKEELEEKEI
VLNHGIRERGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=160957 APQ13_RS00630 WP_002264971.1 108360..109361(+) (ccpA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGAACACAGATGACACAATCACTATTTATGATGTTGCTCGTGAAGCGGGAGTGTCCATGGCAACTGTCAGCCGTGTTGT
GAATGGAAATAAAAATGTCAAAGAGAATACCCGCAAAAAAGTCCTAGAAGTCATTGACCGTCTTGATTATCGGCCAAATG
CTGTGGCGCGTGGTTTGGCAAGTAAGAAAACGACTACGGTAGGTGTGGTTATCCCTAATATTGCTAATGCTTATTTTTCT
ATTTTAGCTAAGGGAATTGATGACATTGCAACCATGTATAAATATAATATTGTACTGGCTTCAAGTGATGAAGATGACGA
TAAGGAAGTCAATGTTATCAATACTTTATTTGCTAAACAGGTTGATGGTATTATTTTTATGGGACATCATTTAACTGAAA
AAATTCGCGCTGAATTTTCACGAGCACGGACACCGGTTGTTTTATCAGGTACTGTAGATCTGGAGCATCAACTCCCCAGT
GTTAATATTGATCATAGTAAGGCAGCACAAGATGCCGTAGCTTTATTGGCCAAACATCATGATAAGATTGCTTTTGTATC
GGGTCCCTTTATTGATGATATCAATGGCAAGGTACGTCTGGCTGGTTATAAAGAAGGCCTGAAAAAGAAAGGATTGCCTT
TCAAAGAAGGACTTGTTTTTGAAGCTCAATATAAGTATCAAGAAGGATATCAGTTAGCGCAGCGTGTCATTAATTCAGGC
GCAACAGCTGCTTATGTTGCTGAGGATGAGTTGGCTGCTGGGCTGTTAAATGGTTTGTTTGCTGCTGGTAAGAAAGTCCC
AGAAGACTTTGAAATTATCACGAGTAATGACTCTACTATTGCGCTTTATACTCGTCCTAATATGACATCTATCAGTCAGC
CGATTTATGATTTAGGAGCAGTTGCTATGCGCATGTTAACAAAGATTATGAACAAGGAAGAATTGGAAGAAAAAGAAATT
GTTCTTAATCATGGTATCAGAGAAAGAGGAACAACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.078

100

0.781

  ccpA Streptococcus pneumoniae D39

75.676

100

0.757

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment