Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CPter91_RS22220 Genome accession   NZ_CP013234
Coordinates   5000757..5002241 (-) Length   494 a.a.
NCBI ID   WP_061944327.1    Uniprot ID   A0A127QAS0
Organism   Collimonas pratensis strain Ter91     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4995757..5007241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS22210 (CPter91_4842) - 4996661..4999585 (-) 2925 WP_061944322.1 ribonucleoside-diphosphate reductase subunit alpha -
  CPter91_RS22215 (CPter91_4844) ampD 5000106..5000744 (-) 639 WP_061944324.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CPter91_RS22220 (CPter91_4845) pilR 5000757..5002241 (-) 1485 WP_061944327.1 sigma-54-dependent transcriptional regulator Regulator
  CPter91_RS22225 (CPter91_4846) - 5002268..5004007 (-) 1740 WP_061944329.1 two-component system sensor histidine kinase NtrB -
  CPter91_RS22230 (CPter91_4847) - 5004011..5004277 (-) 267 WP_061944332.1 PP0621 family protein -
  CPter91_RS22235 (CPter91_4848) - 5004274..5005083 (-) 810 WP_061944334.1 cytochrome C assembly family protein -
  CPter91_RS22240 (CPter91_4849) ffh 5005399..5006766 (+) 1368 WP_061944337.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52898.71 Da        Isoelectric Point: 5.0641

>NTDB_id=160907 CPter91_RS22220 WP_061944327.1 5000757..5002241(-) (pilR) [Collimonas pratensis strain Ter91]
MTSPRILVVDDEAHLRELLEIALVKMGLDVDSADSLAAARSHLASNDYALILTDMRLPDGLGIELVREVTSGDKVIPIAV
ITAYGSADNAVVALKAGAFDYLSKPVALDQLRLMVQSALRIGKPAENPRQPGDVKTRGNGSGNALRLIGQSAAMQELRTQ
IVRLARSMAPVAITGESGSGKELAARDIHALSPRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDREGFFQAANG
GTLLLDEVADLPLAMQVKLLRAIQERRVRKVGATVEEPVDVRLISATHQNLAECVESGRFRQDLYYRLNVIELKLPPLRE
RLDDLGLLIGAVLARLSVFAPQAGPVTLAPAAMDALCTYAFPGNVRELENILERALAFANDGVIEVADLGLKGGGNSRAL
EAQSLDDGYPDAGVGVAGIAVVGLEPVAVAAAALPGGAELPPSLPDYLDDIERDVIRRALTRTHFNRTKAADLLGISFRQ
LRYRMQRLSIHEQD

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=160907 CPter91_RS22220 WP_061944327.1 5000757..5002241(-) (pilR) [Collimonas pratensis strain Ter91]
ATGACTTCACCCCGTATTCTGGTCGTCGATGACGAAGCCCATCTGCGCGAACTGCTAGAAATAGCGCTGGTCAAGATGGG
ACTCGATGTCGACAGCGCTGACAGCCTGGCCGCCGCGCGCAGCCATCTGGCCAGCAACGACTATGCACTGATCCTGACTG
ACATGCGGCTGCCGGACGGTCTCGGCATCGAGCTGGTGCGCGAAGTCACCAGCGGCGACAAGGTGATTCCGATCGCCGTG
ATCACGGCCTATGGCAGCGCCGACAACGCCGTGGTGGCGTTAAAAGCCGGCGCTTTCGACTATTTGTCGAAGCCGGTGGC
CCTGGACCAGCTGCGCCTGATGGTGCAATCGGCGCTGCGCATCGGCAAGCCGGCCGAGAATCCGCGCCAGCCCGGCGACG
TCAAAACGCGCGGTAATGGCAGTGGCAACGCCTTGCGCCTGATCGGCCAGTCCGCCGCCATGCAGGAATTGCGCACCCAG
ATTGTACGGTTGGCGCGCAGCATGGCGCCGGTGGCGATTACCGGCGAGTCCGGCAGCGGCAAGGAACTGGCGGCGCGCGA
TATCCATGCGCTTAGCCCGCGCGCCGACAAGCCGTTTGTCGCCGTCAATTGCGGCGCCATCCCGGAAGCCTTGATGGAGG
CCGAGTTCTTCGGCTACCGCAAAGGCGCATTTACTGGCGCAGCCGACGACCGCGAAGGATTTTTCCAGGCGGCCAATGGC
GGCACCCTGCTGCTGGACGAGGTCGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGTTGCGTGCGATCCAGGAGCGGCG
CGTGCGCAAGGTTGGAGCGACGGTGGAAGAGCCGGTGGATGTCCGTTTGATCAGCGCTACCCATCAGAATCTGGCCGAGT
GTGTCGAATCAGGTAGATTTCGCCAGGATTTGTACTATCGTTTGAATGTTATCGAATTAAAACTGCCGCCTTTGCGGGAG
CGCCTGGACGATCTTGGCTTGCTGATCGGCGCGGTGCTGGCGCGCTTGTCGGTGTTTGCACCGCAGGCGGGGCCGGTGAC
GCTGGCGCCGGCAGCCATGGACGCTTTGTGCACCTATGCCTTTCCGGGCAATGTGCGCGAGCTGGAAAATATCCTGGAGC
GGGCGCTGGCGTTTGCCAACGACGGTGTGATTGAAGTAGCGGATCTCGGCCTCAAGGGCGGCGGCAATAGTCGTGCGCTG
GAAGCGCAAAGCCTGGATGACGGCTATCCCGATGCTGGCGTAGGTGTGGCGGGCATCGCGGTGGTCGGATTGGAGCCGGT
TGCTGTCGCAGCGGCAGCGTTGCCGGGCGGCGCCGAGTTGCCGCCCTCGCTGCCGGACTACCTGGATGATATCGAGCGAG
ATGTCATCCGGCGGGCACTGACCCGCACGCATTTTAACCGGACCAAGGCGGCCGACCTGCTGGGCATCAGCTTCCGCCAG
TTGCGCTATCGCATGCAGCGCCTATCGATTCACGAGCAGGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(448-488)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QAS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.707

100

0.508
  pilR Acinetobacter baumannii strain A118

43.32

100

0.433

Multiple sequence alignment