Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HSISS4_RS08445 Genome accession   NZ_CP013216
Coordinates   1859349..1859867 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain HSISS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1854349..1864867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS08425 (HSISS4_01656) - 1856262..1857206 (+) 945 WP_021143614.1 magnesium transporter CorA family protein -
  HSISS4_RS08430 (HSISS4_01657) - 1857276..1857947 (+) 672 WP_014635046.1 DUF1129 domain-containing protein -
  HSISS4_RS08435 (HSISS4_01658) - 1858064..1858945 (+) 882 WP_037620143.1 DUF4300 family protein -
  HSISS4_RS08440 (HSISS4_01659) rpsR 1859068..1859307 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  HSISS4_RS08445 (HSISS4_01660) ssb 1859349..1859867 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  HSISS4_RS08450 (HSISS4_01661) rpsF 1859879..1860169 (-) 291 WP_003093185.1 30S ribosomal protein S6 -
  HSISS4_RS08455 (HSISS4_01662) - 1860373..1861326 (+) 954 WP_021143611.1 hypothetical protein -
  HSISS4_RS08465 (HSISS4_01663) mutY 1862502..1863653 (+) 1152 WP_021143610.1 A/G-specific adenine glycosylase -
  HSISS4_RS08470 (HSISS4_01665) - 1863797..1863997 (-) 201 WP_021143608.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=160719 HSISS4_RS08445 WP_002891844.1 1859349..1859867(-) (ssb) [Streptococcus salivarius strain HSISS4]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=160719 HSISS4_RS08445 WP_002891844.1 1859349..1859867(-) (ssb) [Streptococcus salivarius strain HSISS4]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACAGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCGCAATCTACACCAAACTTCGGTCGTGATGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment