Detailed information NTG0160719

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BC375_RS01680
• Genome accession: NZ_CP016610
• Coordinates: 386892..389477 (+)
• Length: 861 a.a.
• NCBI ID: WP_046417972.1
• Uniprot ID: -
• Organism: Xylella fastidiosa strain Salento-2
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 381892..394477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BC375_RS01665 (BC375_01575)	-	383435..384643 (-)	1209	WP_038227899.1	cytochrome P450	-
BC375_RS01670 (BC375_01580)	thiE	385526..386140 (-)	615	WP_046417971.1	thiamine phosphate synthase	-
BC375_RS01675 (BC375_01585)	-	386175..386405 (+)	231	WP_031337544.1	rubredoxin	-
BC375_RS01680 (BC375_01590)	clpC	386892..389477 (+)	2586	WP_046417972.1	ATP-dependent chaperone ClpB	Regulator
BC375_RS01685 (BC375_01595)	-	390020..390202 (-)	183	WP_010892913.1	30S ribosomal protein THX	-
BC375_RS01690 (BC375_01600)	-	390327..390737 (-)	411	WP_046417974.1	MerC domain-containing protein	-
BC375_RS01695 (BC375_01605)	-	390895..392940 (+)	2046	WP_010892915.1	TonB-dependent receptor	-
BC375_RS12230	-	393509..393661 (+)	153	WP_023906142.1	hypothetical protein	-

Sequence

Protein

• Length: 861 a.a.
• Molecular weight: 95766.37 Da
• Isoelectric Point: 5.1587

>NTDB_id=160719 BC375_RS01680 WP_046417972.1 386892..389477(+) (clpC) [Xylella fastidiosa strain Salento-2]
MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSALLDQQGGSTRPLLMQAGVNVPLLRERLTEILEALPKVSGQTVN
VSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSL
DLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIE
QAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEADLGRRVVGQEEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDD
RALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAESFVSGDTVQVGVDGGKLVFAKV

Nucleotide

• Length: 2586 bp

>NTDB_id=160719 BC375_RS01680 WP_046417972.1 386892..389477(+) (clpC) [Xylella fastidiosa strain Salento-2]
ATGCGGATGGATAAGCTTACTTCGCGTTTCCAGAATGCGTTGGCTGATGCGCAATCGCTGGCCGTCGGTCGTGACCATAC
TATTATTGAGCCGGTGCATGTTTTTTCGGCATTGCTTGATCAGCAGGGGGGGAGTACACGTCCGTTGCTCATGCAGGCCG
GTGTCAATGTGCCATTGCTGCGTGAGCGGTTGACCGAGATACTTGAGGCATTGCCGAAAGTGAGTGGTCAGACGGTTAAT
GTCTCACCCAGCAATGAATTGAGTCGTTTGTTTCATCGGACTGATAAGTTAGCGCAGCAGCATGGCGATCAGTTTATGGC
CAGTGAGTGGTTCGTGTTGGCTGTGGTCGATGATAGTGGGGGGCTGGGCCAGGCGTTGCGTGCTGCTGGTGCGGAAAAAA
AGAAGATTGAGGCTGCGATTGATAAATTGCGTGGCGGTGAAACTGTCCAGACTGAGAATGCGGAGGAGCAGCGTCAAGCG
TTGGAAAAGTACACGATTGATCTGACTGCCAGGGCTGAGAGTGGCAAGCTTGATCCGGTGATTGGTCGCGATGAGGAAAT
TCGCCGCACGATACAGGTATTGCAGCGGCGTACAAAAAATAATCCTGTGCTGATTGGTGAGCCGGGTGTGGGTAAAACTG
CCATTGTAGAAGGGCTGGCTCAGCGCATTGTCAATGGTGAGGTTCCGGAAGGGTTGCGCAGTAAGCGTCTGCTCTCGCTG
GATTTGGGGGCGTTGATTGCTGGGGCCAAGTTTCGTGGTGAGTTCGAGGAGCGCTTGAAGGGGGTGCTTAACGATCTCGC
TAAGAATGAGGGGCGGGTCATTTTGTTCATTGACGAGCTGCATACCATGGTTGGTGCCGGTAAAGCTGATGGTGCGATGG
ATGCTGGCAATATGCTCAAGCCGGCGTTAGCACGTGGTGAGTTGCATTGTATCGGTGCGACTACGTTGGATGAGTATCGC
AAGTACATTGAGAAGGATGCGGCGTTGGAACGCCGTTTCCAGAAGGTGTTTGTTGGGGAGCCGACGGTGGAGGATACCAT
CGCAATTCTTCGTGGACTTAAGGAAAAGTATGCGTTGCACCACGGTGTGGAAATCACTGATCCGGCTATTGTTGCTGCGG
CTACGCTGTCTAATCGCTACATCACTGATCGTCAGTTACCAGATAAAGCGATTGACTTGATGGATGAGGCTGCCAGTCGT
ATTCGTATGGAAATTGACTCCAAGCCGGAAGAGCTTGATCGTTTGGAGCGTCGGTTGATTCAGTTGAAAATTCAGCGTGA
GATGCTGAAGAAAGAAAAGGATGAGGCGAGCAAGCAGCGTTTAGCCGATCTTGAGCGTGATATTGAGGTTCTGGACCGTG
AATTTTCCGATCTGGAGGAGGTGTGGAGATCAGAAAAAGCCGCGCTACAGGGGGCGACTAAGATCAAGGAGTCGATCGAG
CAGGCCAAGCTTGATTTGGAAGCCGCGCAGCGCCGTCAGGACTACGCCAAGATGAGCGAGATTCAGTATGGTGTACTCCC
CGCGTTGGAGAAGCAGCTGGTGGCAGCAAGTCAGGCGGAACAGCACGATTTTACGTTGGTGCAGGAGAAAGTGACTGCTG
AGGAGATTGCCGAGGTAGTCAGTCGTTGGACTGGTATTCCAGTGAGCAAGATGCTTGAGGGCGAGCGCGATAAGTTGTTG
CGTATGGAAGCTGATCTAGGCCGACGTGTGGTTGGTCAAGAGGAGGCGATCAAGGTGGTATCGGATGCGGTACGCCGTTC
GCGTACTGGTTTGTCTGATCCAAATCGACCGAGCGGCTCGTTCCTTTTTCTGGGTCCGACGGGTGTTGGTAAGACTGAGT
TATGTAAGGCGCTGGCTGAATTTTTGTTCGACAGTCAAGATGCAATGGTCCGCATTGATATGAGTGAGTTCATGGAAAAG
CATTCTGTGGCGCGCCTGATTGGTGCGCCTCCGGGCTATGTGGGTTATGAGGAAGGAGGTTATCTTACTGAATTGGTGCG
ACGTCGGCCTTACTCTCTGATTCTTTTGGATGAAGTGGAGAAGGCGCATAGTGATGTGTTCAATATTCTGCTGCAAGTAC
TTGATGATGGACGCTTGACTGATGGTCAGGGCCGTACTGTTGATTTTCGCAATACCGTTATTGTGATGACATCGAACTTG
GGTTCACATCAGATCCAAGAACTCAGTGGAGACGATTCTCCGGAGGTGTATACGCAAATGAAGGCGGCAGTGATGGAGGT
GGTGCAGGCGCATTTTCGCCCAGAGTTCATTAACAGGTTGGATGATATTGTTGTTTTCCACCCGTTGGACAAGGCGCAAA
TCAAGCAGATTGCGCGGATTCAACTGCAGGGGCTTGAGAAGCGTCTCGCTGAATCTGAGTTGAAACTAGATTTGGATGAT
CGTGCGTTGGAATTGCTTGGTAATGTCGGATTTGATCCTGTATATGGTGCCCGCCCGCTGAAGAGAGCGATCCAATCTCA
GCTGGAGAATCCCTTAGCGCAGCAGATCTTAGCTGAATCGTTCGTCAGTGGAGATACTGTGCAGGTGGGTGTTGATGGAG
GGAAGCTTGTATTCGCTAAGGTGTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-145)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-763)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• AAA lid domain (AAA_lid_9) (342-444)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (769-849)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.213	100	0.455
clpE	Streptococcus mutans UA159	48.617	79.791	0.388
clpE	Streptococcus pneumoniae D39	47.688	80.372	0.383
clpE	Streptococcus pneumoniae TIGR4	47.688	80.372	0.383
clpE	Streptococcus pneumoniae R6	47.688	80.372	0.383
clpE	Streptococcus pneumoniae Rx1	47.688	80.372	0.383
clpC	Lactococcus lactis subsp. cremoris KW2	47.619	80.488	0.383