Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   HSISS4_RS02965 Genome accession   NZ_CP013216
Coordinates   603400..604401 (+) Length   333 a.a.
NCBI ID   WP_059749110.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 598400..609401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS02945 (HSISS4_00543) smpB 599521..599985 (+) 465 WP_002885905.1 SsrA-binding protein SmpB -
  HSISS4_RS02950 (HSISS4_00544) - 600132..601538 (+) 1407 WP_021144483.1 Cof-type HAD-IIB family hydrolase -
  HSISS4_RS02955 (HSISS4_00545) - 601540..601908 (+) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  HSISS4_RS02960 (HSISS4_00546) - 602005..603087 (-) 1083 WP_014634135.1 M24 family metallopeptidase -
  HSISS4_RS02965 (HSISS4_00547) ccpA 603400..604401 (+) 1002 WP_059749110.1 catabolite control protein A Regulator
  HSISS4_RS02970 (HSISS4_00548) - 604461..605528 (+) 1068 WP_021144481.1 MmcQ/YjbR family DNA-binding protein -
  HSISS4_RS02975 (HSISS4_00549) - 605541..606656 (+) 1116 WP_021144480.1 glycerate kinase -
  HSISS4_RS02980 (HSISS4_00550) - 606687..607142 (-) 456 WP_021144479.1 YueI family protein -
  HSISS4_RS02985 (HSISS4_00551) eno 607348..608652 (+) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  HSISS4_RS02990 (HSISS4_00552) - 608802..608987 (-) 186 WP_014634140.1 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36634.54 Da        Isoelectric Point: 5.7144

>NTDB_id=160700 HSISS4_RS02965 WP_059749110.1 603400..604401(+) (ccpA) [Streptococcus salivarius strain HSISS4]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSITQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKHSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGITLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=160700 HSISS4_RS02965 WP_059749110.1 603400..604401(+) (ccpA) [Streptococcus salivarius strain HSISS4]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTATAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCCCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTCTATAACACAGCTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGGCCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTAGTCTTTGAAGCTAAACATAGCTATAAAGATGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAACTTGAAGAAAAAGATGTT
ATTCTTAATCACGGTATTACCTTACGTCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.477

100

0.775

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment