Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   HSISS4_RS01980 Genome accession   NZ_CP013216
Coordinates   385477..385920 (+) Length   147 a.a.
NCBI ID   WP_021147155.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 380477..390920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS01965 (HSISS4_00344) gdhA 381549..382901 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  HSISS4_RS01970 (HSISS4_00345) - 383182..384723 (+) 1542 WP_235586044.1 YfhO family protein -
  HSISS4_RS01975 (HSISS4_00346) - 384881..385291 (+) 411 WP_021144629.1 peptide deformylase -
  HSISS4_RS01980 (HSISS4_00347) rcrR 385477..385920 (+) 444 WP_021147155.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HSISS4_RS01985 (HSISS4_00348) rcrP 385924..387738 (+) 1815 WP_021144627.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS01990 (HSISS4_00349) rcrQ 387728..389506 (+) 1779 WP_021144626.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS01995 (HSISS4_00350) - 389614..390237 (+) 624 WP_021144625.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17216.74 Da        Isoelectric Point: 9.5834

>NTDB_id=160693 HSISS4_RS01980 WP_021147155.1 385477..385920(+) (rcrR) [Streptococcus salivarius strain HSISS4]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKYFREAIHEQLLEGISKEDAEIAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=160693 HSISS4_RS01980 WP_021147155.1 385477..385920(+) (rcrR) [Streptococcus salivarius strain HSISS4]
ATGCATGGAAAAGATACTTTTAGTGAATTTAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCACAAGGATTTGCTGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAAGCTCGAGA
TGTCAAATATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAATAGCCTTTCGTG
TCTTTCACCAAATTCGTAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558

Multiple sequence alignment