Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HSISS4_RS01990 Genome accession   NZ_CP013216
Coordinates   387728..389506 (+) Length   592 a.a.
NCBI ID   WP_021144626.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 382728..394506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS01970 (HSISS4_00345) - 383182..384723 (+) 1542 WP_235586044.1 YfhO family protein -
  HSISS4_RS01975 (HSISS4_00346) - 384881..385291 (+) 411 WP_021144629.1 peptide deformylase -
  HSISS4_RS01980 (HSISS4_00347) rcrR 385477..385920 (+) 444 WP_021147155.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HSISS4_RS01985 (HSISS4_00348) rcrP 385924..387738 (+) 1815 WP_021144627.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS01990 (HSISS4_00349) rcrQ 387728..389506 (+) 1779 WP_021144626.1 ABC transporter ATP-binding protein Regulator
  HSISS4_RS01995 (HSISS4_00350) - 389614..390237 (+) 624 WP_021144625.1 GNAT family N-acetyltransferase -
  HSISS4_RS02000 (HSISS4_00351) - 390385..391008 (+) 624 WP_002890107.1 GTP pyrophosphokinase -
  HSISS4_RS02005 (HSISS4_00352) - 391010..391687 (+) 678 WP_014633969.1 response regulator transcription factor -
  HSISS4_RS02010 (HSISS4_00353) - 391701..392924 (+) 1224 WP_059749077.1 sensor histidine kinase -
  HSISS4_RS02015 (HSISS4_00354) pyrH 393162..393899 (+) 738 WP_002885551.1 UMP kinase -
  HSISS4_RS02020 (HSISS4_00355) frr 393914..394471 (+) 558 WP_002885567.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65089.00 Da        Isoelectric Point: 4.9393

>NTDB_id=160695 HSISS4_RS01990 WP_021144626.1 387728..389506(+) (rcrQ) [Streptococcus salivarius strain HSISS4]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPTGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=160695 HSISS4_RS01990 WP_021144626.1 387728..389506(+) (rcrQ) [Streptococcus salivarius strain HSISS4]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATCACACCTACAAAAATGGGGACGATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTTTATATGCGATTTCAGCCATTGTGGGTTACTTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCGCAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGACAGTCACTCTCAAGGGGACACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGCTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTCATCATGGGCTTCTCGCAACCCCTTTTCAAGCGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTCGTAACGAGTTACAATGCCGCTCAAGAAAGCAGTCAGGCTTTCAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATAGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCTATCAAAGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACCTACGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCAATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTACTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACTAATGACATGAAGCGTGAAACTGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATTACCACACTTCCAACGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGACAGAAGCAGCTCTTGACCATTGCACGTGCGCTTCTTAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCGGTTGATACCCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGGCGGACTTCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment