Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BBH51_RS03385 Genome accession   NZ_CP016553
Coordinates   676460..677149 (-) Length   229 a.a.
NCBI ID   WP_033001430.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671460..682149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS12325 - 671614..671790 (-) 177 WP_005550241.1 hypothetical protein -
  BBH51_RS03365 (BBH51_03365) - 671799..672809 (-) 1011 WP_005539195.1 WD40 repeat domain-containing protein -
  BBH51_RS03370 (BBH51_03370) - 672812..674932 (-) 2121 WP_005539198.1 alpha/beta hydrolase -
  BBH51_RS03375 (BBH51_03375) - 674955..676082 (-) 1128 WP_005539200.1 DUF4123 domain-containing protein -
  BBH51_RS03380 (BBH51_03380) - 676112..676291 (-) 180 WP_187374682.1 hypothetical protein -
  BBH51_RS03385 (BBH51_03385) pilD 676460..677149 (-) 690 WP_033001430.1 prepilin peptidase Machinery gene
  BBH51_RS03390 (BBH51_03390) pilC 677146..678369 (-) 1224 WP_005540455.1 type II secretion system F family protein Machinery gene
  BBH51_RS03395 (BBH51_03395) pilB 678362..679771 (-) 1410 WP_005540457.1 GspE/PulE family protein Machinery gene
  BBH51_RS03400 (BBH51_03400) pilA 679798..680250 (-) 453 WP_005550263.1 pilin Machinery gene
  BBH51_RS03405 (BBH51_03405) ampD 680372..680926 (+) 555 WP_005540460.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BBH51_RS03410 (BBH51_03410) nanQ 681400..681870 (-) 471 WP_005540462.1 N-acetylneuraminate anomerase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26072.84 Da        Isoelectric Point: 7.9832

>NTDB_id=160677 BBH51_RS03385 WP_033001430.1 676460..677149(-) (pilD) [Aggregatibacter actinomycetemcomitans strain IDH781]
MMWLLFLLGGVLCGWRVYHYVEHFADNLSREVHAAYTEIYPQNPLHFTAENSVLKPLKRHFSAHLYSLLFTLLFMICYAI
NEPLQALCFALYGALLIVISLVDWHYRLISPALCQALFALGLGAAYWQLGTLTLAQSLQSAVIFFGVFYAIYHAAKWYYR
QEALGRGDYWLALGLGVFLPAQQLPVFLFLACFFGLLYAAYAKYQHRTLNTMPFGPFMSLAGVVCLLLN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=160677 BBH51_RS03385 WP_033001430.1 676460..677149(-) (pilD) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGATGTGGCTACTTTTTCTGCTTGGCGGTGTGCTTTGTGGCTGGCGCGTTTATCATTACGTAGAACATTTCGCCGATAA
CCTCAGCCGCGAGGTTCATGCCGCCTACACGGAAATTTACCCGCAAAACCCACTGCACTTTACGGCGGAAAACTCGGTTC
TAAAACCGCTTAAACGGCATTTTTCCGCACATCTTTACAGCCTTTTATTCACCTTGCTGTTCATGATTTGTTATGCCATC
AATGAACCGTTACAAGCCCTTTGTTTTGCACTGTATGGCGCCTTATTAATCGTCATTTCTTTGGTGGATTGGCACTATCG
CCTGATTTCACCCGCCTTATGCCAAGCCTTGTTCGCTCTCGGTTTAGGCGCGGCATACTGGCAACTCGGCACATTAACAT
TGGCGCAAAGCCTGCAAAGTGCGGTCATTTTTTTCGGTGTTTTTTATGCCATCTACCACGCCGCAAAATGGTACTACCGA
CAAGAAGCTCTCGGACGCGGCGATTATTGGCTGGCACTGGGCTTAGGCGTTTTTCTACCGGCACAACAACTTCCCGTTTT
TTTATTCCTCGCCTGCTTTTTCGGCTTACTTTATGCCGCCTACGCAAAATACCAACACCGCACACTCAACACCATGCCTT
TCGGTCCCTTTATGTCCCTAGCCGGCGTGGTCTGTTTATTGCTTAATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

38.496

98.69

0.38
  pilD Haemophilus influenzae Rd KW20

38.009

96.507

0.367