Detailed information NTG0160464

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H78_RS27540
• Genome accession: NZ_CP013184
• Coordinates: 6053986..6055320 (+)
• Length: 444 a.a.
• NCBI ID: WP_041752595.1
• Uniprot ID: A0A9Q7R678
• Organism: Pseudomonas protegens strain H78
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6048986..6060320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H78_RS27520 (H78_05511)	pgeF	6050342..6051067 (-)	726	WP_077934794.1	peptidoglycan editing factor PgeF	-
H78_RS27525 (H78_05512)	rluD	6051064..6052026 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
H78_RS27530 (H78_05513)	-	6052177..6053202 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
H78_RS27535 (H78_05514)	-	6053327..6053560 (+)	234	WP_015637081.1	PP0621 family protein	-
H78_RS27540 (H78_05515)	pilR	6053986..6055320 (+)	1335	WP_041752595.1	sigma-54 dependent transcriptional regulator	Regulator
H78_RS27545 (H78_05516)	thiO	6055317..6056417 (-)	1101	WP_053160097.1	glycine oxidase ThiO	-
H78_RS27550 (H78_05517)	-	6056471..6056872 (-)	402	WP_015637084.1	type IV pilin protein	-
H78_RS27555 (H78_05518)	-	6056888..6059950 (-)	3063	WP_077934795.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49275.50 Da
• Isoelectric Point: 8.6800

>NTDB_id=160464 H78_RS27540 WP_041752595.1 6053986..6055320(+) (pilR) [Pseudomonas protegens strain H78]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=160464 H78_RS27540 WP_041752595.1 6053986..6055320(+) (pilR) [Pseudomonas protegens strain H78]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.327	97.748	0.365