Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACA40_RS07640 Genome accession   NZ_CP013183
Coordinates   1693433..1695649 (+) Length   738 a.a.
NCBI ID   WP_057407544.1    Uniprot ID   A0AB74A1U8
Organism   Pseudomonas syringae pv. lapsa strain ATCC 10859     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688433..1700649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA40_RS07625 (ACA40_07625) - 1690772..1691395 (+) 624 WP_057407545.1 glutathione S-transferase -
  ACA40_RS07630 (ACA40_07630) - 1691579..1692511 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  ACA40_RS07635 (ACA40_07635) - 1692508..1693296 (+) 789 WP_010405533.1 ABC transporter permease -
  ACA40_RS07640 (ACA40_07640) comA 1693433..1695649 (+) 2217 WP_057407544.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACA40_RS07645 (ACA40_07645) exbB 1695731..1696408 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACA40_RS07650 (ACA40_07650) - 1696405..1696836 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  ACA40_RS07655 (ACA40_07655) lpxK 1696836..1697831 (+) 996 WP_057407543.1 tetraacyldisaccharide 4'-kinase -
  ACA40_RS07660 (ACA40_07660) - 1697849..1698034 (+) 186 WP_002552679.1 Trm112 family protein -
  ACA40_RS07665 (ACA40_07665) kdsB 1698031..1698795 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACA40_RS07670 (ACA40_07670) murB 1698830..1699849 (+) 1020 WP_057407542.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80316.57 Da        Isoelectric Point: 10.1980

>NTDB_id=160439 ACA40_RS07640 WP_057407544.1 1693433..1695649(+) (comA) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
MRTGMIALALGLLALRFLPALPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGELLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=160439 ACA40_RS07640 WP_057407544.1 1693433..1695649(+) (comA) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGATCTGGCTATT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACCT
GGGCCTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGCCAGCCCGTGAACAGCGGCGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTGAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCTTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCGCTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGCTGATCGCCGTTGGCTTGTTGCCGATCTTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGGCCGTTCGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTAGTCGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCGGCAGCGTTGCCGGCCTGGCTGCCCAGTGCGGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTCGGGGCCTTGCTCTTGTTACTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTCTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCA
GCAGCGGTTCATCAGGCTTTTCCGGTAAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTTGCGCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCGCGCTGGGAGTGGGATGGCGTGGTTTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

97.019

0.606
  comA Ralstonia pseudosolanacearum GMI1000

35.196

100

0.401

Multiple sequence alignment