Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACA40_RS07645 Genome accession   NZ_CP013183
Coordinates   1695731..1696408 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas syringae pv. lapsa strain ATCC 10859     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690731..1701408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA40_RS07625 (ACA40_07625) - 1690772..1691395 (+) 624 WP_057407545.1 glutathione S-transferase -
  ACA40_RS07630 (ACA40_07630) - 1691579..1692511 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  ACA40_RS07635 (ACA40_07635) - 1692508..1693296 (+) 789 WP_010405533.1 ABC transporter permease -
  ACA40_RS07640 (ACA40_07640) comA 1693433..1695649 (+) 2217 WP_057407544.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACA40_RS07645 (ACA40_07645) exbB 1695731..1696408 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACA40_RS07650 (ACA40_07650) - 1696405..1696836 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  ACA40_RS07655 (ACA40_07655) lpxK 1696836..1697831 (+) 996 WP_057407543.1 tetraacyldisaccharide 4'-kinase -
  ACA40_RS07660 (ACA40_07660) - 1697849..1698034 (+) 186 WP_002552679.1 Trm112 family protein -
  ACA40_RS07665 (ACA40_07665) kdsB 1698031..1698795 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACA40_RS07670 (ACA40_07670) murB 1698830..1699849 (+) 1020 WP_057407542.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=160440 ACA40_RS07645 WP_002552676.1 1695731..1696408(+) (exbB) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=160440 ACA40_RS07645 WP_002552676.1 1695731..1696408(+) (exbB) [Pseudomonas syringae pv. lapsa strain ATCC 10859]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGACTCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCCGGGGCCACCGCCAACGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCGCTTCCTGCAGAGCCGCGTTGATGAGCTGGTGGTCGGCAT
GGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment