Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GLA29479_RS19990 Genome accession   NZ_CP013141
Coordinates   4919779..4920939 (-) Length   386 a.a.
NCBI ID   WP_082638834.1    Uniprot ID   -
Organism   Lysobacter antibioticus strain ATCC 29479     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4914779..4925939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLA29479_RS19970 (GLA29479_4505) - 4915220..4915447 (+) 228 WP_057972621.1 hypothetical protein -
  GLA29479_RS19975 (GLA29479_4507) - 4915626..4918028 (+) 2403 WP_057973285.1 excinuclease ABC subunit UvrA -
  GLA29479_RS19985 (GLA29479_4509) - 4918302..4919528 (+) 1227 WP_057972623.1 nuclear transport factor 2 family protein -
  GLA29479_RS19990 (GLA29479_4510) comM 4919779..4920939 (-) 1161 WP_082638834.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GLA29479_RS19995 (GLA29479_4511) - 4921032..4922351 (-) 1320 WP_057972624.1 M56 family metallopeptidase -
  GLA29479_RS20000 (GLA29479_4512) - 4922353..4922739 (-) 387 WP_057972625.1 BlaI/MecI/CopY family transcriptional regulator -
  GLA29479_RS20005 (GLA29479_4513) - 4922963..4923994 (+) 1032 WP_082638835.1 cation diffusion facilitator family transporter -
  GLA29479_RS20010 (GLA29479_4514) frr 4924258..4924815 (+) 558 WP_057917482.1 ribosome recycling factor -
  GLA29479_RS20015 (GLA29479_4515) uppS 4924961..4925731 (+) 771 WP_057972626.1 polyprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 41005.63 Da        Isoelectric Point: 8.3334

>NTDB_id=160291 GLA29479_RS19990 WP_082638834.1 4919779..4920939(-) (comM) [Lysobacter antibioticus strain ATCC 29479]
MKAAIQAESEGAFGRRLIVPAGNGAEAALASRVEARTGRTLLEVCAMLCGRAELPQAQPAPLLRAPGLDMRDVRGQTQAR
RALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDEALETAAIASVAGGAHGHGLDPARWRERPFRSPHHTASAV
ALVGGGADPRPGEISLAHQGVLFLDELPEWERRALEVLREPLESGVVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSS
GRCRCAGDAIRRYRARISGPLLDRIDLHIEVPRLPSSALRPDQPSGESSAAIRERVVAARERQLGRSGKTNAQLSQAETT
ATCVLSQSDHALLERAVDALQLSARSMHRIQRVARTVADLAESPQIATAHLTEAIGYRRGDREVAT

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=160291 GLA29479_RS19990 WP_082638834.1 4919779..4920939(-) (comM) [Lysobacter antibioticus strain ATCC 29479]
TTGAAGGCTGCGATCCAAGCCGAGAGTGAAGGCGCGTTCGGGCGCCGCCTGATCGTGCCGGCCGGCAACGGCGCCGAGGC
GGCACTCGCCAGCCGCGTCGAAGCGCGCACCGGCCGCACCCTGCTCGAAGTCTGCGCGATGCTCTGCGGCCGCGCCGAAC
TGCCGCAGGCCCAGCCCGCACCGCTGCTGCGTGCGCCCGGCCTCGACATGCGCGATGTGCGCGGCCAGACGCAGGCCCGG
CGCGCCCTCGAAATCGCCGCCGCCGGTGGTCACCACCTTCTGCTGATCGGCCCGCCGGGCTGCGGCAAGACCCTGCTGGC
CTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAAGACGAAGCGCTGGAGACCGCGGCGATCGCGTCGGTCGCCGGCG
GCGCGCACGGCCACGGTCTCGACCCGGCGCGCTGGCGCGAACGCCCGTTCCGCTCGCCGCACCACACCGCCAGTGCCGTC
GCCCTGGTCGGCGGCGGCGCCGATCCGCGCCCCGGCGAGATTTCGCTCGCGCATCAGGGCGTGCTGTTTCTCGACGAACT
GCCCGAGTGGGAACGGCGCGCGCTGGAAGTCCTGCGCGAGCCGCTCGAATCCGGCGTGGTGACGGTGTCGCGCGCGGCGC
GCAGCGCCGAGTTCCCGGCGCGCTTCCAACTGGTCGCGGCGATGAACCCCTGCCCTTGCGGCTGGGCCGGCGACAGCAGC
GGACGCTGCCGTTGCGCCGGCGACGCGATCCGCCGTTACCGCGCGCGCATTTCCGGCCCGCTACTCGACCGCATCGACCT
GCACATCGAGGTGCCGCGTCTGCCCTCTTCGGCGCTGCGCCCCGACCAACCCAGCGGCGAAAGCAGCGCCGCGATCCGCG
AGCGCGTCGTCGCCGCGCGCGAACGCCAGTTGGGGCGCAGCGGCAAGACCAATGCGCAGCTCAGCCAGGCCGAGACCACC
GCGACCTGCGTCCTCAGCCAGTCCGACCATGCCTTGCTCGAACGCGCCGTCGATGCCTTGCAACTGTCGGCGCGTTCCAT
GCACCGCATCCAGCGGGTCGCGCGCACCGTTGCCGATCTTGCCGAGAGCCCGCAGATCGCCACGGCGCATTTGACCGAGG
CGATCGGGTATCGGCGCGGCGATCGCGAGGTCGCGACCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(286-378)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(69-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.973

95.855

0.508
  comM Vibrio campbellii strain DS40M4

52.162

95.855

0.5
  comM Glaesserella parasuis strain SC1401

50.265

97.927

0.492
  comM Haemophilus influenzae Rd KW20

50.404

96.114

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.924

100

0.459
  comM Legionella pneumophila str. Paris

48.034

92.228

0.443
  comM Legionella pneumophila strain ERS1305867

48.034

92.228

0.443

Multiple sequence alignment