Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FORC40_RS08190 Genome accession   NZ_CP016398
Coordinates   1652366..1652968 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain FORC_040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647366..1657968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC40_RS08170 (FORC40_1482) yajC 1648862..1649122 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  FORC40_RS08175 (FORC40_1483) tgt 1649141..1650280 (-) 1140 WP_001112049.1 tRNA guanosine(34) transglycosylase Tgt -
  FORC40_RS08180 (FORC40_1484) queA 1650303..1651328 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FORC40_RS08185 (FORC40_1485) ruvB 1651330..1652334 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FORC40_RS08190 (FORC40_1486) ruvA 1652366..1652968 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  FORC40_RS08195 (FORC40_1487) - 1652982..1653437 (-) 456 WP_088867607.1 ACT domain-containing protein -
  FORC40_RS08200 (FORC40_1488) obgE 1653450..1654742 (-) 1293 WP_000496103.1 GTPase ObgE -
  FORC40_RS08205 (FORC40_1489) rpmA 1655755..1656039 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  FORC40_RS08210 (FORC40_1490) - 1656051..1656371 (-) 321 WP_020978210.1 ribosomal-processing cysteine protease Prp -
  FORC40_RS08215 (FORC40_1491) rplU 1656377..1656685 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  FORC40_RS08220 (FORC40_1492) mreD 1657047..1657577 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=160108 FORC40_RS08190 WP_000271547.1 1652366..1652968(-) (ruvA) [Staphylococcus aureus strain FORC_040]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=160108 FORC40_RS08190 WP_000271547.1 1652366..1652968(-) (ruvA) [Staphylococcus aureus strain FORC_040]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGCAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425