Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SE1039_RS00690 Genome accession   NZ_CP013114
Coordinates   160810..161343 (+) Length   177 a.a.
NCBI ID   WP_002506087.1    Uniprot ID   -
Organism   Staphylococcus equorum strain KS1039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 155810..166343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS00665 (SE1039_01410) - 156180..157064 (+) 885 WP_002511963.1 mechanosensitive ion channel family protein -
  SE1039_RS00670 (SE1039_01420) - 157086..157301 (+) 216 WP_056935167.1 DUF951 domain-containing protein -
  SE1039_RS00675 (SE1039_01430) ychF 157301..158398 (+) 1098 WP_002511965.1 redox-regulated ATPase YchF -
  SE1039_RS00680 (SE1039_01440) - 159288..160082 (-) 795 WP_056935168.1 GH25 family lysozyme -
  SE1039_RS00685 (SE1039_01450) rpsF 160485..160790 (+) 306 WP_002511967.1 30S ribosomal protein S6 -
  SE1039_RS00690 (SE1039_01460) ssbA 160810..161343 (+) 534 WP_002506087.1 single-stranded DNA-binding protein Machinery gene
  SE1039_RS00695 (SE1039_01470) rpsR 161395..161637 (+) 243 WP_002506086.1 30S ribosomal protein S18 -
  SE1039_RS00700 (SE1039_01480) - 161932..162120 (+) 189 WP_056935169.1 hypothetical protein -
  SE1039_RS00705 (SE1039_01490) - 162338..163639 (+) 1302 WP_056935170.1 N-acetylmuramoyl-L-alanine amidase -
  SE1039_RS00710 (SE1039_01500) - 163808..164011 (-) 204 WP_056935171.1 hypothetical protein -
  SE1039_RS00715 (SE1039_01510) - 164156..164395 (+) 240 WP_056935172.1 hypothetical protein -
  SE1039_RS00720 (SE1039_01520) - 164611..164925 (+) 315 WP_002506081.1 PTS sugar transporter subunit IIB -
  SE1039_RS00725 (SE1039_01530) celB 164935..166230 (+) 1296 WP_056935173.1 PTS cellobiose transporter subunit IIC -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19851.40 Da        Isoelectric Point: 5.2149

>NTDB_id=159995 SE1039_RS00690 WP_002506087.1 160810..161343(+) (ssbA) [Staphylococcus equorum strain KS1039]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNQNNNNNYNNNSSNKNNQSDNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=159995 SE1039_RS00690 WP_002506087.1 160810..161343(+) (ssbA) [Staphylococcus equorum strain KS1039]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGACGTCGTATATTTGTAACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAACCAACGTCATGCCCAAGAAGGAAATAACAATTTCCAAAACTTTGGCGGACAACAATCAGGTCAAAATACGTCAT
CTTATCAAAACAATAACCAAAACAACAACAATAATTATAACAACAATTCATCAAACAAAAATAATCAATCGGATAATCCA
TTTGCAAATGCAAACGGACCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.582

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

52.809

100

0.531
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

62.147

0.362

Multiple sequence alignment