Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AR456_RS01850 | Genome accession | NZ_CP013106 |
| Coordinates | 390592..391254 (+) | Length | 220 a.a. |
| NCBI ID | WP_021819633.1 | Uniprot ID | W1N229 |
| Organism | Halomonas huangheensis strain BJGMM-B45 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 385592..396254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AR456_RS01840 (AR456_01840) | uvrA | 385866..388760 (-) | 2895 | WP_021819631.1 | excinuclease ABC subunit UvrA | - |
| AR456_RS01845 (AR456_01845) | - | 388982..390355 (+) | 1374 | WP_021819632.1 | MFS transporter | - |
| AR456_RS01850 (AR456_01850) | ssb | 390592..391254 (+) | 663 | WP_021819633.1 | single-stranded DNA-binding protein | Machinery gene |
| AR456_RS01855 (AR456_01855) | - | 391474..392358 (-) | 885 | WP_021819634.1 | alpha/beta hydrolase fold domain-containing protein | - |
| AR456_RS01860 (AR456_01860) | - | 392626..393513 (+) | 888 | WP_031208241.1 | glycine betaine ABC transporter substrate-binding protein | - |
| AR456_RS01865 (AR456_01865) | soxR | 393576..394037 (-) | 462 | WP_021819636.1 | redox-sensitive transcriptional activator SoxR | - |
| AR456_RS01870 (AR456_01870) | - | 394163..394735 (+) | 573 | WP_021819637.1 | NADPH-dependent FMN reductase | - |
| AR456_RS01875 (AR456_01875) | - | 394735..395601 (+) | 867 | WP_021819638.1 | arylamine N-acetyltransferase family protein | - |
Sequence
Protein
Download Length: 220 a.a. Molecular weight: 23177.11 Da Isoelectric Point: 5.2423
>NTDB_id=159918 AR456_RS01850 WP_021819633.1 390592..391254(+) (ssb) [Halomonas huangheensis strain BJGMM-B45]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRIVLFNKLAEIAQQYVKKGSKLYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRGDGGQGGNYGGAPQGGQQNYGGSPQQGGAPQQGGAPQQGGGNYGGAPQ
GGGQQYGGAPQQGGYGGAPQQPAGGQPQNRPAPNQGGGQKGNFGAPDPGSFDDFDDEIPF
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRIVLFNKLAEIAQQYVKKGSKLYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRGDGGQGGNYGGAPQGGQQNYGGSPQQGGAPQQGGAPQQGGGNYGGAPQ
GGGQQYGGAPQQGGYGGAPQQPAGGQPQNRPAPNQGGGQKGNFGAPDPGSFDDFDDEIPF
Nucleotide
Download Length: 663 bp
>NTDB_id=159918 AR456_RS01850 WP_021819633.1 390592..391254(+) (ssb) [Halomonas huangheensis strain BJGMM-B45]
ATGGCCCGTGGCGTCAACAAGGTCATCCTCATCGGTAACCTGGGACAGGATCCTGAGGTGCGTTTCACCCCTTCCGGAAC
GGCCGTGGCCAACCTCAACCTGGCGACCACCGACACCTGGATGGATCGTCAGAGTGGCCAGCGTCAGGAGCGTACGGAAT
GGCATCGTATCGTGCTGTTCAACAAGCTGGCGGAGATTGCCCAGCAGTACGTGAAGAAGGGCTCGAAGCTGTACATCGAA
GGCCGCCTGCAGACGCGTAAGTGGCAGGATCAGAATGGCCAGGACCGTTATTCCACGGAGATCGTCGCCAACGACATGCA
GATGCTCGACGGACGCGGTGATGGTGGTCAGGGCGGCAACTATGGCGGTGCACCTCAGGGTGGCCAGCAGAACTATGGTG
GATCACCTCAGCAGGGTGGAGCACCTCAACAGGGCGGTGCCCCACAGCAGGGTGGCGGCAACTATGGTGGTGCTCCTCAA
GGCGGTGGCCAGCAGTATGGCGGTGCTCCGCAACAGGGCGGCTATGGTGGTGCTCCACAGCAGCCGGCTGGTGGTCAGCC
GCAGAATCGCCCCGCGCCGAACCAGGGCGGAGGCCAGAAGGGCAACTTCGGCGCACCGGACCCGGGTAGCTTCGACGACT
TCGATGACGAGATCCCGTTCTAG
ATGGCCCGTGGCGTCAACAAGGTCATCCTCATCGGTAACCTGGGACAGGATCCTGAGGTGCGTTTCACCCCTTCCGGAAC
GGCCGTGGCCAACCTCAACCTGGCGACCACCGACACCTGGATGGATCGTCAGAGTGGCCAGCGTCAGGAGCGTACGGAAT
GGCATCGTATCGTGCTGTTCAACAAGCTGGCGGAGATTGCCCAGCAGTACGTGAAGAAGGGCTCGAAGCTGTACATCGAA
GGCCGCCTGCAGACGCGTAAGTGGCAGGATCAGAATGGCCAGGACCGTTATTCCACGGAGATCGTCGCCAACGACATGCA
GATGCTCGACGGACGCGGTGATGGTGGTCAGGGCGGCAACTATGGCGGTGCACCTCAGGGTGGCCAGCAGAACTATGGTG
GATCACCTCAGCAGGGTGGAGCACCTCAACAGGGCGGTGCCCCACAGCAGGGTGGCGGCAACTATGGTGGTGCTCCTCAA
GGCGGTGGCCAGCAGTATGGCGGTGCTCCGCAACAGGGCGGCTATGGTGGTGCTCCACAGCAGCCGGCTGGTGGTCAGCC
GCAGAATCGCCCCGCGCCGAACCAGGGCGGAGGCCAGAAGGGCAACTTCGGCGCACCGGACCCGGGTAGCTTCGACGACT
TCGATGACGAGATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.091 |
100 |
0.491 |
| ssb | Glaesserella parasuis strain SC1401 |
44.7 |
98.636 |
0.441 |
| ssb | Neisseria meningitidis MC58 |
40.092 |
98.636 |
0.395 |