Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC37_RS02525 Genome accession   NZ_CP016321
Coordinates   535002..535727 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain FORC_037     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530002..540727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS02500 (FORC37_0473) sltY 530034..531989 (+) 1956 WP_088427444.1 murein transglycosylase -
  FORC37_RS02505 (FORC37_0474) trpR 532005..532313 (+) 309 WP_011078578.1 trp operon repressor -
  FORC37_RS02510 (FORC37_0475) yjjX 532343..532879 (-) 537 WP_198300270.1 inosine/xanthosine triphosphatase -
  FORC37_RS02515 (FORC37_0476) pheA 532904..534082 (-) 1179 WP_011078576.1 prephenate dehydratase -
  FORC37_RS02520 (FORC37_0477) hpf 534326..534649 (-) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC37_RS02525 (FORC37_0478) comL 535002..535727 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  FORC37_RS02530 (FORC37_0479) rluD 535864..536841 (+) 978 WP_017419681.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC37_RS02535 (FORC37_0480) pgeF 536845..537561 (+) 717 WP_198300259.1 peptidoglycan editing factor PgeF -
  FORC37_RS02540 (FORC37_0481) clpC 537679..540252 (+) 2574 WP_017789378.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=159595 FORC37_RS02525 WP_011078574.1 535002..535727(-) (comL) [Vibrio vulnificus strain FORC_037]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=159595 FORC37_RS02525 WP_011078574.1 535002..535727(-) (comL) [Vibrio vulnificus strain FORC_037]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACCGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTTTAGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACATGAGAAAATGGATTGGGTGTT
GTACATGCGTGGTCTCACCCACATGGCGCAAGATCGTAACTTCATGCATGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTAAAGCAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTACCCAAACAGCCCATATGCGGAAGAT
TCGCAAAAGCGCATGTTTGCTCTAAAAAACCGTTTAGCAGAATATGACCTAGCAACCGCTGATTATTATTTGCGTCGCGA
AGCTTGGATTGCAGCCATCAACCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCT
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39