Detailed information NTG0159596

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FORC37_RS02540
• Genome accession: NZ_CP016321
• Coordinates: 537679..540252 (+)
• Length: 857 a.a.
• NCBI ID: WP_017789378.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_037
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 532679..545252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC37_RS02515 (FORC37_0476)	pheA	532904..534082 (-)	1179	WP_011078576.1	prephenate dehydratase	-
FORC37_RS02520 (FORC37_0477)	hpf	534326..534649 (-)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
FORC37_RS02525 (FORC37_0478)	comL	535002..535727 (-)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
FORC37_RS02530 (FORC37_0479)	rluD	535864..536841 (+)	978	WP_017419681.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FORC37_RS02535 (FORC37_0480)	pgeF	536845..537561 (+)	717	WP_198300259.1	peptidoglycan editing factor PgeF	-
FORC37_RS02540 (FORC37_0481)	clpC	537679..540252 (+)	2574	WP_017789378.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96042.94 Da
• Isoelectric Point: 5.2921

>NTDB_id=159596 FORC37_RS02540 WP_017789378.1 537679..540252(+) (clpC) [Vibrio vulnificus strain FORC_037]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLAAIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLATFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLATRMEEHGYQLEVSDKAL
DLIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=159596 FORC37_RS02540 WP_017789378.1 537679..540252(+) (clpC) [Vibrio vulnificus strain FORC_037]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAATGGCAGTCCTATTCGTCCACTGTTGACCATCTTAA
ATGTGGATGTCACCCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGCTTACCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTCTCCTCGGCCATGGGCGCGATGTTTAACCTGTGCGATAAGATTGCGCAAAAACGCCAAGATGCTTACATCTC
ATCGGAAATCTTTTTGCTCGCAGCAATCGAAGATAGAGGGCCACTTGGTCAACTCTTCAAAGAACTTGGCTTAACCGAAC
AAAAAGTGAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGCGCAGAGCAGGGCAAACTTGACCCTGTGATTGGTCGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAACGTCGTACCAAAAACAACCCCGTGATCATTGGTGAACCCGGTGTCGGTAAAACCG
CCATCGTTGAAGGCTTAGCGCAACGCATCATCAATAACGAGGTTCCTGAAGGTTTGCGTGGTCGCCGAGTGTTATCACTC
GATATGGGCGCTTTGGTGGCTGGAGCGAAGTACCGTGGTGAGTTTGAAGAGCGACTTAAATCCGTATTGAATGAGCTCTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCAGGTAAAGGTGAAGGTTCGATGG
ATGCCGGCAATATGCTCAAGCCCGCACTAGCACGTGGTGAGTTACATTGTGTGGGCGCCACGACACTCGATGAGTATCGT
CAGTATATCGAGAAAGATCCGGCTCTTGAGCGCCGCTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTGGAAGACACCAT
TGCGATTTTGCGTGGTTTAAAAGAACGCTATGAGCTGCACCATCACGTTGAGATCACCGATCCTGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCGGATAAGGCGATCGATCTTATCGACGAAGCAGCATCCAGT
ATTCGTATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAGAAGCGTCTGCGCTCACTCAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCAGCTCTATCTGGCACTCAGCATATTAAAGCGGCGTTAGAG
CAAGCGCGTATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
AGAGCTTGAGAAACAACTTGACCTAGCAACGCAAGCGGAGATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGACA
ATGAAATTGCGGAAGTGCTTTCAAAGCAAACGGGTATCCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTGCTT
CGCATGGAAGAGGTGCTACATAAACGTGTCATTGGGCAGAAAGAGGCGGTGGAAGTGGTCTCTAATGCGATACGCCGAAG
CCGTGCTGGCTTGTCTGATCCCAATAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACCGGCGTGGGGAAAACGGAAC
TGTGCAAGACATTGGCGACCTTCATGTTCGACAGTGAGGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAGAAA
CACTCAGTGGCACGCTTAGTCGGTGCGCCTCCAGGCTATGTGGGTTATGAAGAAGGTGGCTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTAATTTTGCTCGACGAAGTGGAAAAGGCACATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTTATCATGACATCAAACCTA
GGCTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTAATGGAAGTGGTAACCAA
GCACTTTAGGCCGGAGTTTTTGAACCGTGTTGATGAGACTGTTGTCTTCCACCCACTAGGCCAAGACCACATTAAGTCGA
TCGCTGCGATTCAACTTAACCGCTTGGCGACTCGCATGGAAGAGCATGGCTATCAGTTGGAAGTATCCGATAAAGCGCTC
GACTTGATCGCGCAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAAAA
CCCGCTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.637	99.767	0.415
clpE	Streptococcus mutans UA159	47.865	79.23	0.379
clpE	Streptococcus pneumoniae D39	47.858	78.996	0.378
clpE	Streptococcus pneumoniae Rx1	47.858	78.996	0.378
clpE	Streptococcus pneumoniae R6	47.858	78.996	0.378
clpC	Lactococcus lactis subsp. cremoris KW2	46.009	80.397	0.37