Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOT18_RS10465 Genome accession   NZ_CP016300
Coordinates   2187412..2188077 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CMC-CR-MDR-Ab66     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2182412..2193077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT18_RS10435 (AOT18_10280) - 2183322..2183795 (+) 474 WP_000575818.1 GrpB family protein -
  AOT18_RS10440 (AOT18_10285) trmA 2183899..2184984 (+) 1086 WP_000204640.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  AOT18_RS10445 (AOT18_10290) - 2185233..2185463 (+) 231 WP_000011679.1 hypothetical protein -
  AOT18_RS10450 (AOT18_10295) - 2185499..2186245 (-) 747 WP_000699311.1 phosphodiester glycosidase family protein -
  AOT18_RS10465 (AOT18_10310) crp 2187412..2188077 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOT18_RS21020 - 2188318..2188437 (+) 120 Protein_2021 hypothetical protein -
  AOT18_RS10470 (AOT18_10315) - 2188516..2188938 (+) 423 WP_001195082.1 OsmC family protein -
  AOT18_RS20535 - 2189078..2190168 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  AOT18_RS10490 (AOT18_10330) - 2190380..2190970 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  AOT18_RS10495 (AOT18_10335) - 2191016..2191606 (-) 591 WP_000550331.1 YceI family protein -
  AOT18_RS10500 (AOT18_10340) - 2191821..2192228 (+) 408 WP_000248284.1 OsmC family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=159550 AOT18_RS10465 WP_000203219.1 2187412..2188077(-) (crp) [Acinetobacter baumannii strain CMC-CR-MDR-Ab66]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=159550 AOT18_RS10465 WP_000203219.1 2187412..2188077(-) (crp) [Acinetobacter baumannii strain CMC-CR-MDR-Ab66]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425