Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AKK22_RS08320 Genome accession   NZ_CP013029
Coordinates   1536760..1537389 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2012C-4227     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531760..1542389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKK22_RS08295 (AKK22_07830) ycbZ 1532161..1533921 (-) 1761 WP_032206208.1 AAA family ATPase -
  AKK22_RS08300 (AKK22_07835) matP 1534107..1534559 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AKK22_RS08305 (AKK22_07840) ompA 1534635..1535675 (-) 1041 WP_000750416.1 porin OmpA -
  AKK22_RS08315 (AKK22_07850) sulA 1536032..1536541 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AKK22_RS08320 (AKK22_07855) sxy/tfoX 1536760..1537389 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AKK22_RS08325 (AKK22_07860) yccS 1537352..1539514 (-) 2163 WP_074433556.1 YccS family putative transporter -
  AKK22_RS08330 (AKK22_07865) yccF 1539524..1539970 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AKK22_RS08335 (AKK22_07870) helD 1540093..1542147 (+) 2055 WP_032206206.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=159374 AKK22_RS08320 WP_000839153.1 1536760..1537389(+) (sxy/tfoX) [Escherichia coli strain 2012C-4227]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=159374 AKK22_RS08320 WP_000839153.1 1536760..1537389(+) (sxy/tfoX) [Escherichia coli strain 2012C-4227]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment