Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SAST42_RS07440 Genome accession   NZ_CP012976
Coordinates   1534315..1534812 (-) Length   165 a.a.
NCBI ID   WP_029694076.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130942     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529315..1539812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST42_RS07415 (SAST42_01494) gcvPB 1529477..1530949 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SAST42_RS07420 (SAST42_03902) gcvPA 1530942..1532288 (-) 1347 WP_000019678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAST42_RS07425 (SAST42_03903) gcvT 1532308..1533399 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAST42_RS07430 (SAST42_01499) - 1533558..1534082 (-) 525 WP_001015121.1 shikimate kinase -
  SAST42_RS07435 (SAST42_04354) - 1534072..1534218 (-) 147 WP_001789879.1 hypothetical protein -
  SAST42_RS07440 (SAST42_03523) comGF 1534315..1534812 (-) 498 WP_029694076.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAST42_RS07445 (SAST42_04434) comGE 1534730..1535029 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAST42_RS07450 (SAST42_03525) comGD 1535016..1535462 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAST42_RS07455 (SAST42_03526) comGC 1535440..1535751 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAST42_RS07460 (SAST42_04047) comGB 1535765..1536835 (-) 1071 Protein_1430 competence type IV pilus assembly protein ComGB -
  SAST42_RS07465 (SAST42_01506) comGA 1536807..1537781 (-) 975 WP_000697235.1 competence type IV pilus ATPase ComGA Machinery gene
  SAST42_RS07470 (SAST42_01507) - 1537833..1538456 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAST42_RS07475 (SAST42_01508) - 1538453..1538782 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAST42_RS07480 (SAST42_01509) - 1538782..1539768 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2877

>NTDB_id=158816 SAST42_RS07440 WP_029694076.1 1534315..1534812(-) (comGF) [Staphylococcus aureus strain ST20130942]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIFV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=158816 SAST42_RS07440 WP_029694076.1 1534315..1534812(-) (comGF) [Staphylococcus aureus strain ST20130942]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTTTGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.364

100

0.964
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment