Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SAST42_RS05865 Genome accession   NZ_CP012976
Coordinates   1191626..1192498 (+) Length   290 a.a.
NCBI ID   WP_000931871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130942     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1186626..1197498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST42_RS05845 (SAST42_01169) ylqF 1187462..1188346 (+) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -
  SAST42_RS05850 (SAST42_01170) - 1188330..1189097 (+) 768 WP_000176406.1 ribonuclease HII -
  SAST42_RS05855 (SAST42_01171) sucC 1189206..1190372 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  SAST42_RS05860 (SAST42_03448) sucD 1190394..1191302 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SAST42_RS05865 (SAST42_01173) dprA 1191626..1192498 (+) 873 WP_000931871.1 DNA-processing protein DprA Machinery gene
  SAST42_RS05870 (SAST42_03859) topA 1192672..1194747 (+) 2076 WP_025174257.1 type I DNA topoisomerase -
  SAST42_RS05875 (SAST42_01175) trmFO 1194903..1196210 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33246.53 Da        Isoelectric Point: 8.3112

>NTDB_id=158811 SAST42_RS05865 WP_000931871.1 1191626..1192498(+) (dprA) [Staphylococcus aureus strain ST20130942]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLFSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=158811 SAST42_RS05865 WP_000931871.1 1191626..1192498(+) (dprA) [Staphylococcus aureus strain ST20130942]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCTTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Lactococcus lactis subsp. cremoris KW2

37.857

96.552

0.366

Multiple sequence alignment