Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AOB58_RS08335 Genome accession   NZ_CP012968
Coordinates   1682643..1683176 (-) Length   177 a.a.
NCBI ID   WP_002506087.1    Uniprot ID   -
Organism   Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677643..1688176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOB58_RS08305 (AOB58_1662) - 1677983..1678729 (+) 747 WP_064783261.1 poly-gamma-glutamate hydrolase family protein -
  AOB58_RS08310 (AOB58_1663) - 1678846..1679235 (-) 390 WP_064783262.1 tautomerase family protein -
  AOB58_RS08315 (AOB58_1664) - 1679299..1680144 (-) 846 WP_064783263.1 ketose-bisphosphate aldolase -
  AOB58_RS08320 (AOB58_1665) - 1680347..1681648 (-) 1302 WP_064783264.1 N-acetylmuramoyl-L-alanine amidase -
  AOB58_RS08325 (AOB58_1666) - 1681865..1682053 (-) 189 WP_021339624.1 hypothetical protein -
  AOB58_RS08330 (AOB58_1667) rpsR 1682349..1682591 (-) 243 WP_002506086.1 30S ribosomal protein S18 -
  AOB58_RS08335 (AOB58_1668) ssbA 1682643..1683176 (-) 534 WP_002506087.1 single-stranded DNA-binding protein Machinery gene
  AOB58_RS08340 (AOB58_1669) rpsF 1683196..1683501 (-) 306 WP_002511967.1 30S ribosomal protein S6 -
  AOB58_RS08345 (AOB58_1670) - 1683905..1684699 (+) 795 WP_021339623.1 GH25 family lysozyme -
  AOB58_RS08350 (AOB58_1671) ychF 1685681..1686778 (-) 1098 WP_064783265.1 redox-regulated ATPase YchF -
  AOB58_RS08355 (AOB58_1672) - 1686778..1686993 (-) 216 WP_002506091.1 DUF951 domain-containing protein -
  AOB58_RS08360 (AOB58_1673) - 1687015..1687899 (-) 885 WP_021339622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19851.40 Da        Isoelectric Point: 5.2149

>NTDB_id=158648 AOB58_RS08335 WP_002506087.1 1682643..1683176(-) (ssbA) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNQNNNNNYNNNSSNKNNQSDNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=158648 AOB58_RS08335 WP_002506087.1 1682643..1683176(-) (ssbA) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTTAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGTCGTCGTATATTTGTAACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAACCAACGTCATGCCCAAGAAGGAAATAACAATTTCCAAAACTTTGGCGGACAACAATCAGGTCAAAATACGTCAT
CTTATCAAAACAATAACCAAAACAACAACAATAATTATAACAACAATTCATCAAACAAAAATAATCAATCGGATAATCCA
TTTGCAAATGCAAACGGACCAATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.582

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

52.809

100

0.531
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

62.147

0.362

Multiple sequence alignment