Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A9Z04_RS05605 Genome accession   NZ_CP016007
Coordinates   1186514..1187251 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NGF1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181514..1192251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Z04_RS05590 (A9Z04_05590) clpC 1181968..1184541 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A9Z04_RS05595 (A9Z04_05595) yfiH 1184671..1185402 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  A9Z04_RS05600 (A9Z04_05600) rluD 1185399..1186379 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A9Z04_RS05605 (A9Z04_05605) comL 1186514..1187251 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A9Z04_RS05615 (A9Z04_05615) raiA 1187522..1187863 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A9Z04_RS27160 pheL 1187967..1188014 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A9Z04_RS05620 (A9Z04_05620) pheA 1188113..1189273 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  A9Z04_RS05625 (A9Z04_05625) tyrA 1189316..1190437 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A9Z04_RS05630 (A9Z04_05630) aroF 1190448..1191518 (-) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A9Z04_RS05635 (A9Z04_05635) yfiL 1191728..1192093 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=158478 A9Z04_RS05605 WP_000197686.1 1186514..1187251(+) (comL) [Escherichia coli strain NGF1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=158478 A9Z04_RS05605 WP_000197686.1 1186514..1187251(+) (comL) [Escherichia coli strain NGF1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment