Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FORC23_RS03280 Genome accession   NZ_CP012950
Coordinates   666757..667371 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_023 isolate 378     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 661757..672371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC23_RS03270 (FORC23_0552) aceF 663062..664933 (+) 1872 WP_070225512.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  FORC23_RS03275 (FORC23_0553) lpdA 665202..666629 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  FORC23_RS03280 (FORC23_0554) opaR 666757..667371 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  FORC23_RS03285 (FORC23_0555) hpt 667690..668220 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  FORC23_RS03290 (FORC23_0556) can 668294..668962 (-) 669 WP_005462578.1 carbonate dehydratase -
  FORC23_RS03295 (FORC23_0557) - 669246..670916 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  FORC23_RS03300 (FORC23_0558) - 671169..672086 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=158477 FORC23_RS03280 WP_005479697.1 666757..667371(-) (opaR) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=158477 FORC23_RS03280 WP_005479697.1 666757..667371(-) (opaR) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment