Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | FORC23_RS01950 | Genome accession | NZ_CP012950 |
| Coordinates | 402322..402915 (+) | Length | 197 a.a. |
| NCBI ID | WP_029806468.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_023 isolate 378 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 397322..407915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC23_RS01935 (FORC23_0330) | - | 398038..400608 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FORC23_RS01940 (FORC23_0331) | pilM | 400751..401767 (+) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FORC23_RS01945 (FORC23_0332) | pilN | 401751..402329 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| FORC23_RS01950 (FORC23_0333) | pilO | 402322..402915 (+) | 594 | WP_029806468.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC23_RS01955 (FORC23_0334) | pilP | 402905..403420 (+) | 516 | WP_025442304.1 | pilus assembly protein PilP | Machinery gene |
| FORC23_RS01960 (FORC23_0335) | pilQ | 403452..405200 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC23_RS01965 (FORC23_0336) | aroK | 405389..405907 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC23_RS01970 (FORC23_0337) | aroB | 405939..407039 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23043.59 Da Isoelectric Point: 4.8225
>NTDB_id=158461 FORC23_RS01950 WP_029806468.1 402322..402915(+) (pilO) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGVGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGVGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=158461 FORC23_RS01950 WP_029806468.1 402322..402915(+) (pilO) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGGTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGGTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.684 |
96.447 |
0.904 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |