Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APS55_RS02715 Genome accession   NZ_CP012920
Coordinates   629268..629765 (-) Length   165 a.a.
NCBI ID   WP_034530638.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain MP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 624268..634765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APS55_RS02695 (APS55_02685) dnaB 624870..626258 (-) 1389 WP_034530644.1 replicative DNA helicase -
  APS55_RS02700 (APS55_02690) rplI 626283..626735 (-) 453 WP_034530642.1 50S ribosomal protein L9 -
  APS55_RS02705 (APS55_02695) - 626803..628839 (-) 2037 WP_034530641.1 DHH family phosphoesterase -
  APS55_RS02710 (APS55_02700) rpsR 629003..629239 (-) 237 WP_034530639.1 30S ribosomal protein S18 -
  APS55_RS02715 (APS55_02705) ssb 629268..629765 (-) 498 WP_034530638.1 single-stranded DNA-binding protein Machinery gene
  APS55_RS02720 (APS55_02710) rpsF 629810..630100 (-) 291 WP_034530636.1 30S ribosomal protein S6 -
  APS55_RS02725 (APS55_02715) - 630284..631372 (-) 1089 WP_051960995.1 hypothetical protein -
  APS55_RS02730 (APS55_02720) - 631494..632783 (-) 1290 WP_051960994.1 MFS transporter -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17916.29 Da        Isoelectric Point: 4.5407

>NTDB_id=158259 APS55_RS02715 WP_034530638.1 629268..629765(-) (ssb) [Apilactobacillus kunkeei strain MP2]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGNNNAGNNAPQANAGNNNPFASSNNASPSNGGNNSADPFANSGDQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=158259 APS55_RS02715 WP_034530638.1 629268..629765(-) (ssb) [Apilactobacillus kunkeei strain MP2]
ATGATTAATCGTACAACTTTAACTGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCAGCCGTAGG
TAACTTCACTTTAGCTGTTGATCGTAGTTTTACCAACCAACAAGGTGAAAGAGAAGCAGATTTTATCAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCATAAGGGTGCTTTGGTTGGTATTGATGGACGTATTCAAACAAGA
AATTACGAAAATCAACAAGGCCAAAGAGTATATGTTACTGAAGTAGTTGTAGAAAACTTTGCATTACTAGAACCTCGTTC
AAGTAACCAAGGTAACAACAACGCCGGCAACAATGCTCCTCAAGCAAATGCAGGAAATAACAATCCTTTTGCTTCATCAA
ACAATGCTTCCCCATCTAATGGTGGTAACAACTCAGCGGATCCATTCGCTAACTCTGGTGATCAAATTGATATTTCCGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.471

100

0.685
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.618
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.242

0.364

Multiple sequence alignment