Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AOY20_RS02420 Genome accession   NZ_CP012808
Coordinates   512522..513154 (+) Length   210 a.a.
NCBI ID   WP_054580389.1    Uniprot ID   A0A0N9V5H9
Organism   Acinetobacter equi strain 114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507522..518154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS02410 (AOY20_02410) - 509658..510458 (-) 801 WP_054582517.1 NAD-dependent epimerase/dehydratase family protein -
  AOY20_RS02415 (AOY20_02415) recG 510490..512535 (+) 2046 WP_054580388.1 ATP-dependent DNA helicase RecG -
  AOY20_RS02420 (AOY20_02420) comF 512522..513154 (+) 633 WP_054580389.1 ComF family protein Machinery gene
  AOY20_RS02425 (AOY20_02425) - 513151..513561 (-) 411 WP_054580390.1 NUDIX hydrolase -
  AOY20_RS02430 (AOY20_02430) - 513564..514157 (-) 594 WP_054580391.1 TIGR00730 family Rossman fold protein -
  AOY20_RS02435 (AOY20_02435) - 514311..515324 (+) 1014 WP_054580392.1 magnesium and cobalt transport protein CorA -
  AOY20_RS02440 (AOY20_02440) - 515396..515686 (-) 291 WP_054580393.1 STAS domain-containing protein -
  AOY20_RS02445 (AOY20_02445) - 515699..516331 (-) 633 WP_054580394.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  AOY20_RS02450 (AOY20_02450) - 516348..517013 (-) 666 WP_054580395.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AOY20_RS02455 (AOY20_02455) mlaE 517013..517792 (-) 780 WP_054580396.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24609.15 Da        Isoelectric Point: 9.5715

>NTDB_id=157741 AOY20_RS02420 WP_054580389.1 512522..513154(+) (comF) [Acinetobacter equi strain 114]
MLMFNLFSKSKNLITPILRCQLCSLDSQYKATICKDCWTQIPWETEKIIKQEVPIFVACRYEYPINRIIQKFKYEQQLHF
QHLLANLILQLHLPKVQAIVPMPISEERLIERGYNQSLEVAKIVAKILNIPIWQPIQRMHQHSQKGLTRLERIENIQSQF
QIKKDYKIRYKRVLILDDVVTTGSSILALMQSLEQLGCQKIFACAIANAN

Nucleotide


Download         Length: 633 bp        

>NTDB_id=157741 AOY20_RS02420 WP_054580389.1 512522..513154(+) (comF) [Acinetobacter equi strain 114]
ATGCTTATGTTTAACTTATTTTCAAAATCAAAAAATTTAATAACTCCGATACTACGATGTCAACTCTGTAGCTTAGATTC
CCAATACAAAGCCACAATTTGCAAAGATTGTTGGACTCAAATCCCTTGGGAAACTGAAAAAATCATTAAGCAAGAAGTTC
CTATTTTTGTTGCTTGCCGATATGAATATCCAATTAATCGAATTATTCAAAAATTTAAATATGAACAACAACTTCATTTT
CAGCACTTACTTGCAAATTTAATATTGCAATTACATCTGCCTAAAGTTCAAGCTATTGTTCCCATGCCTATTTCAGAAGA
ACGCTTAATTGAACGAGGATACAACCAAAGCTTAGAAGTCGCGAAAATTGTAGCAAAAATACTAAACATTCCGATTTGGC
AGCCAATTCAACGAATGCATCAGCACTCTCAAAAAGGGCTAACACGCCTTGAACGAATTGAAAATATTCAAAGTCAATTT
CAAATAAAAAAAGACTATAAGATTCGCTATAAAAGAGTATTGATTTTAGATGATGTTGTTACAACCGGAAGTTCTATTCT
TGCCTTAATGCAAAGTTTAGAACAACTCGGTTGTCAAAAAATATTTGCCTGTGCAATTGCAAACGCAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9V5H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.071

94.286

0.538
  comF Acinetobacter baumannii D1279779

56.566

94.286

0.533

Multiple sequence alignment