Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SanJ4211_RS07845 Genome accession   NZ_CP012805
Coordinates   1554549..1555475 (-) Length   308 a.a.
NCBI ID   WP_003026180.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4211     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549549..1560475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS07825 (SanJ4211_1547) - 1550533..1551498 (+) 966 WP_003026172.1 LacI family DNA-binding transcriptional regulator -
  SanJ4211_RS07830 (SanJ4211_1548c) - 1551572..1552396 (-) 825 WP_021002027.1 Cof-type HAD-IIB family hydrolase -
  SanJ4211_RS07835 (SanJ4211_1549c) amiF 1552539..1553462 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SanJ4211_RS07840 (SanJ4211_1550c) amiE 1553473..1554540 (-) 1068 WP_021002028.1 ABC transporter ATP-binding protein Regulator
  SanJ4211_RS07845 (SanJ4211_1551c) amiD 1554549..1555475 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  SanJ4211_RS07850 (SanJ4211_1552c) amiC 1555475..1556971 (-) 1497 WP_003026183.1 ABC transporter permease Regulator
  SanJ4211_RS07855 (SanJ4211_1553c) amiA3 1557348..1559327 (-) 1980 WP_021002029.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34488.54 Da        Isoelectric Point: 9.7392

>NTDB_id=157720 SanJ4211_RS07845 WP_003026180.1 1554549..1555475(-) (amiD) [Streptococcus anginosus strain J4211]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=157720 SanJ4211_RS07845 WP_003026180.1 1554549..1555475(-) (amiD) [Streptococcus anginosus strain J4211]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACAATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAACGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCCATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATCATGCGTTATCGCGACTTGGAATATAACCTTGCCAGCCGAACTTTGGGTACGCCAACACTGAAAA
TCATCGTGAAAAACATCATGCCACAATTGGTTTCTGTTATTGTGACCACGGCTTCGCAACTGCTTCCAAGTTTCATTTCT
TATGAAGCGTTTCTATCGTTCTTTGGTTTAGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAATGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.013

100

0.87
  amiD Streptococcus thermophilus LMG 18311

85.065

100

0.851
  amiD Streptococcus thermophilus LMD-9

85.065

100

0.851

Multiple sequence alignment