Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SanJ4211_RS07835 Genome accession   NZ_CP012805
Coordinates   1552539..1553462 (-) Length   307 a.a.
NCBI ID   WP_003031730.1    Uniprot ID   I0SFK8
Organism   Streptococcus anginosus strain J4211     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547539..1558462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4211_RS07820 (SanJ4211_1546) - 1549095..1550552 (+) 1458 WP_057489804.1 sucrose-6-phosphate hydrolase -
  SanJ4211_RS07825 (SanJ4211_1547) - 1550533..1551498 (+) 966 WP_003026172.1 LacI family DNA-binding transcriptional regulator -
  SanJ4211_RS07830 (SanJ4211_1548c) - 1551572..1552396 (-) 825 WP_021002027.1 Cof-type HAD-IIB family hydrolase -
  SanJ4211_RS07835 (SanJ4211_1549c) amiF 1552539..1553462 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SanJ4211_RS07840 (SanJ4211_1550c) amiE 1553473..1554540 (-) 1068 WP_021002028.1 ABC transporter ATP-binding protein Regulator
  SanJ4211_RS07845 (SanJ4211_1551c) amiD 1554549..1555475 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  SanJ4211_RS07850 (SanJ4211_1552c) amiC 1555475..1556971 (-) 1497 WP_003026183.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34802.03 Da        Isoelectric Point: 6.4261

>NTDB_id=157718 SanJ4211_RS07835 WP_003031730.1 1552539..1553462(-) (amiF) [Streptococcus anginosus strain J4211]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=157718 SanJ4211_RS07835 WP_003031730.1 1552539..1553462(-) (amiF) [Streptococcus anginosus strain J4211]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATCAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCATTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACACGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCGCTTGACGTCTCTGTGCGCGC
GCAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGCTTGACTTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTAGAAGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873

Multiple sequence alignment