Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SanJ4206_RS01700 Genome accession   NZ_CP012719
Coordinates   340205..342163 (+) Length   652 a.a.
NCBI ID   WP_157622008.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4206     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 338450..339789 340205..342163 flank 416


Gene organization within MGE regions


Location: 338450..342163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS01695 - 338450..339789 (+) 1340 WP_115233514.1 IS3 family transposase -
  SanJ4206_RS01700 (SanJ4206_0302) amiA3 340205..342163 (+) 1959 WP_157622008.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72327.47 Da        Isoelectric Point: 7.8581

>NTDB_id=156760 SanJ4206_RS01700 WP_157622008.1 340205..342163(+) (amiA3) [Streptococcus anginosus strain J4206]
MKSSKWIIATGVVLSAGILLSGCGKSASSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDQYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYASVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTPSRAETYWNSKTTNNILFPVNADFLKSQGKNFGSVKPTSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKAATQEAVLNKAFRQAINFAYNRTAYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLAD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPTDQTSKIGVQSESSMKQSVESVLGTENVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLQNFGLEPGQENDKIKAVGLDTYTEMLAEANAETNETKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGASSSYFKYVKLQDKIVTTKEYESAKKKWLKEKETSN
KKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=156760 SanJ4206_RS01700 WP_157622008.1 340205..342163(+) (amiA3) [Streptococcus anginosus strain J4206]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGTGCTGGAATCCTATTATCAGGCTGTGGCAAGTCAGC
TTCTAGCACATCAACTTATTCATACGTGTATACACAAGATCCAGATACGCTAAATTATCTGATGGCGAACCGTGCGACAA
CTTCAGATGTTGTGACTAACTTAGTTGATGGATTATTGGAAAATGACCAGTACGGAAATTTAGTTCCGGCGCTTGCTAAG
TCATGGACAGTCTCCAAAGATGGCTTGACATATACGTATAAATTACGTAAAGATGCTAAATGGTACACATCAGAAGGTGA
AGAGTACGCAAGTGTAAAAGCGCAAGACTTTGTAACTGGCTTGAAATACGCCGCAGATAATAAATCAGAAGCCCTTTACC
TCGTTCAAGATTCTGTCAAAGGTTTAGATGCTTACATCAAGGGTGAAACGAAAGATTTTTCAACGGTTGGAGTAAAAGCT
TTAGATGACTATACAGTACAGTATACACCCAGCCGTGCAGAGACTTATTGGAATTCAAAAACGACCAATAATATCCTCTT
CCCAGTTAATGCAGATTTCTTGAAATCACAAGGAAAAAATTTTGGTTCTGTAAAACCAACCAGCATTCTATACAATGGTC
CTTATCTATTGAAGTCTCTGACAGCCAAGTCTTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CATTTGGATAACATTAAATTGACATATTATGACGGCTCTGACCAAGAAGCTCTTATCCGTAACTTCACAGATGGTGCCTA
TAGTGCAGCTCGTCTTTATCCAAATAGCTCTAGTTTTGCTTCTGTTAAGAAACAATATGCTAACAATATCATCTATAGTT
TGCAAGATGCGACCAGCTACTATTATAACTTTAATTTAAATCGTCAGTCTTACAACCATACATCTAAGAAAACAGATGCT
CAAAAGGCTGCGACACAAGAAGCGGTGCTAAATAAAGCTTTCCGCCAAGCTATCAACTTTGCCTATAATCGTACTGCTTA
TGGTGCACAAAGTAATGGGAAAGACGGAGCGACAAAGGTATTGCGGAACACACTCGTGCCACCAACATTTGTTTCTATCG
GTGATAAAACGTTTGGTGATGTTGTGTCTTCTAAATTGGTAAACTATGGTTCAGAATGGTCAAATATGAATTTGGCCGAT
GCACAAGATGCTTATTACAATCCAGAAAAAGCCAAGGCGAAGTTTGCTCAAGCTAAAGCAGAATTGCAAGCAAAAGGTGT
TCAGTTCCCTATTCACTTAGATGTACCGACTGATCAGACAAGCAAAATTGGTGTTCAATCGGAAAGTTCCATGAAGCAAT
CTGTTGAGTCTGTCTTGGGCACAGAAAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTAAATAATATCAGT
TATTTTGCTAATACAGCTGCTCAAAAGGACTATGATCTGTATAATGGTGGCTGGTCTGGTGACTATCAAGACCCATCTAC
TTATTTAGATACTTTGAATACAAAAAATGGTGGTAGTTTACAAAACTTTGGTCTGGAGCCAGGTCAAGAAAATGATAAGA
TTAAGGCAGTTGGACTGGACACGTATACAGAGATGTTAGCAGAAGCAAATGCCGAAACCAATGAAACGAAGCGCTATGAA
AAATATGCCGAAGCACAAGCGTGGTTAATTGATAGTGGCTTGACAATGCCAAACCTGTCTCTTGGGGGAACACCATCCGT
GACGAAAACAGTTCCATTTAGCCGTTCTTATTCATTAGTTGGAATCAAAGGTGCTTCAAGCAGTTATTTCAAATATGTCA
AACTGCAAGACAAAATTGTAACAACAAAAGAATACGAAAGTGCTAAAAAGAAATGGCTAAAAGAAAAAGAAACCTCTAAT
AAAAAAGCGCAAGATGACTACGAAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

57.534

100

0.58
  amiA3 Streptococcus thermophilus LMG 18311

57.382

100

0.578
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.578

Multiple sequence alignment