Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AOT13_RS16675 Genome accession   NZ_CP012712
Coordinates   3384205..3384501 (-) Length   98 a.a.
NCBI ID   WP_003249184.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain DSM 2542     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3379205..3389501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT13_RS16635 (AOT13_16615) - 3379695..3381362 (+) 1668 WP_003249199.1 SNF2-related protein -
  AOT13_RS16640 (AOT13_16620) - 3381349..3382140 (+) 792 WP_003249197.1 YqhG family protein -
  AOT13_RS16645 (AOT13_16625) - 3382198..3382377 (-) 180 WP_003249195.1 YqzE family protein -
  AOT13_RS16655 (AOT13_16635) comGG 3382643..3383032 (-) 390 WP_003249192.1 competence type IV pilus minor pilin ComGG -
  AOT13_RS16660 (AOT13_16640) comGF 3383049..3383474 (-) 426 WP_003249190.1 competence type IV pilus minor pilin ComGF -
  AOT13_RS16665 (AOT13_16645) comGE 3383471..3383794 (-) 324 WP_003249188.1 competence type IV pilus minor pilin ComGE -
  AOT13_RS16670 (AOT13_16650) comGD 3383778..3384221 (-) 444 WP_003249186.1 competence type IV pilus minor pilin ComGD -
  AOT13_RS16675 (AOT13_16655) comGC 3384205..3384501 (-) 297 WP_003249184.1 competence type IV pilus major pilin ComGC Machinery gene
  AOT13_RS16680 (AOT13_16660) comGB 3384514..3385545 (-) 1032 WP_003249183.1 competence type IV pilus assembly protein ComGB -
  AOT13_RS16685 (AOT13_16665) comGA 3385538..3386602 (-) 1065 WP_003249181.1 competence type IV pilus ATPase ComGA Machinery gene
  AOT13_RS16690 (AOT13_16670) - 3386803..3387501 (+) 699 WP_003249180.1 helix-turn-helix domain-containing protein -
  AOT13_RS16695 (AOT13_16675) - 3387701..3387943 (+) 243 WP_003249178.1 DUF2626 family protein -
  AOT13_RS16700 (AOT13_16680) - 3387994..3389127 (-) 1134 WP_003249175.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10930.83 Da        Isoelectric Point: 7.1327

>NTDB_id=156707 AOT13_RS16675 WP_003249184.1 3384205..3384501(-) (comGC) [Parageobacillus thermoglucosidasius strain DSM 2542]
MNEKAFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCEAFVNTVQAQVKAYEMEHNKIPTIQELINEKYIKSDQCP
NGRKIQISSDGKVSESGA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=156707 AOT13_RS16675 WP_003249184.1 3384205..3384501(-) (comGC) [Parageobacillus thermoglucosidasius strain DSM 2542]
ATGAATGAAAAAGCGTTCACATTGATTGAAATGTTGATCGTGCTAATGGTTATTTCTGTTTTATTGCTTATCGTCATTCC
GAATATCACGAAACATAATGGAATGATTAATAATAAAGGCTGCGAAGCGTTCGTAAACACCGTGCAAGCTCAAGTAAAGG
CATATGAAATGGAACATAACAAAATTCCGACGATACAGGAGCTCATCAACGAAAAGTATATTAAGTCCGATCAGTGCCCA
AACGGACGTAAAATTCAAATCAGCAGCGACGGGAAAGTAAGTGAAAGCGGTGCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.945

92.857

0.51
  comGC Staphylococcus aureus MW2

45.745

95.918

0.439
  comGC Staphylococcus aureus N315

45.745

95.918

0.439

Multiple sequence alignment