Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   AN159_RS01740 Genome accession   NZ_CP012694
Coordinates   310707..311303 (+) Length   198 a.a.
NCBI ID   WP_002246121.1    Uniprot ID   X5EPX0
Organism   Neisseria meningitidis strain 331401     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305707..316303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS01715 (AN159_01725) - 305965..306552 (-) 588 WP_002246116.1 superoxide dismutase -
  AN159_RS01720 (AN159_01730) dnaB 306715..308121 (+) 1407 WP_069972263.1 replicative DNA helicase -
  AN159_RS01725 (AN159_01735) pilH 308430..309107 (+) 678 WP_002246118.1 GspH/FimT family pseudopilin Machinery gene
  AN159_RS01730 (AN159_01740) pilV 309131..309742 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  AN159_RS01735 (AN159_01745) pilJ 309739..310728 (+) 990 WP_050177628.1 PilW family protein Machinery gene
  AN159_RS01740 (AN159_01750) pilK 310707..311303 (+) 597 WP_002246121.1 pilus assembly PilX family protein Machinery gene
  AN159_RS01745 (AN159_01755) pilX 311308..311781 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  AN159_RS01750 (AN159_01770) - 313438..313866 (-) 429 Protein_331 AzlC family ABC transporter permease -
  AN159_RS01755 (AN159_01775) dut 314014..314466 (+) 453 WP_002245956.1 dUTP diphosphatase -
  AN159_RS01760 (AN159_01780) dapC 314543..315730 (+) 1188 WP_002245957.1 succinyldiaminopimelate transaminase -
  AN159_RS14760 - 315818..315943 (+) 126 Protein_334 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21696.63 Da        Isoelectric Point: 7.5813

>NTDB_id=156587 AN159_RS01740 WP_002246121.1 310707..311303(+) (pilK) [Neisseria meningitidis strain 331401]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQGNPTVEAVKRSCLAKSTGLCIDNKGMEYKKGTRSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=156587 AN159_RS01740 WP_002246121.1 310707..311303(+) (pilK) [Neisseria meningitidis strain 331401]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCTTGCAAAATCTA
CAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCGCCGCGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5EPX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.624

100

0.894

Multiple sequence alignment