Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AN159_RS01725 Genome accession   NZ_CP012694
Coordinates   308430..309107 (+) Length   225 a.a.
NCBI ID   WP_002246118.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 331401     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303430..314107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS14755 - 304093..304200 (+) 108 Protein_321 IS5/IS1182 family transposase -
  AN159_RS01705 (AN159_01715) - 304245..304577 (+) 333 WP_002213854.1 hypothetical protein -
  AN159_RS01710 (AN159_01720) - 304909..305418 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  AN159_RS01715 (AN159_01725) - 305965..306552 (-) 588 WP_002246116.1 superoxide dismutase -
  AN159_RS01720 (AN159_01730) dnaB 306715..308121 (+) 1407 WP_069972263.1 replicative DNA helicase -
  AN159_RS01725 (AN159_01735) pilH 308430..309107 (+) 678 WP_002246118.1 GspH/FimT family pseudopilin Machinery gene
  AN159_RS01730 (AN159_01740) pilV 309131..309742 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  AN159_RS01735 (AN159_01745) pilJ 309739..310728 (+) 990 WP_050177628.1 PilW family protein Machinery gene
  AN159_RS01740 (AN159_01750) pilK 310707..311303 (+) 597 WP_002246121.1 pilus assembly PilX family protein Machinery gene
  AN159_RS01745 (AN159_01755) pilX 311308..311781 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  AN159_RS01750 (AN159_01770) - 313438..313866 (-) 429 Protein_331 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25166.81 Da        Isoelectric Point: 10.0276

>NTDB_id=156584 AN159_RS01725 WP_002246118.1 308430..309107(+) (pilH) [Neisseria meningitidis strain 331401]
MCTRKQQGFTLTELLIVMAIAAIMAMIALPNMSQWIASRRIASHAERVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NKCDSGKKGQGMLAFGDKNGNKIYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=156584 AN159_RS01725 WP_002246118.1 308430..309107(+) (pilH) [Neisseria meningitidis strain 331401]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGATATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.574

96

0.831

Multiple sequence alignment