Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   AN159_RS01185 Genome accession   NZ_CP012694
Coordinates   212207..215821 (-) Length   1204 a.a.
NCBI ID   WP_069972248.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 331401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 207207..220821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS01165 (AN159_01165) hemE 208293..209354 (+) 1062 Protein_222 uroporphyrinogen decarboxylase -
  AN159_RS01170 (AN159_01170) radA 209543..210922 (+) 1380 WP_079871344.1 DNA repair protein RadA Machinery gene
  AN159_RS01175 (AN159_01175) - 211198..211677 (-) 480 WP_002246096.1 DUF302 domain-containing protein -
  AN159_RS01180 (AN159_01180) - 211809..212168 (-) 360 WP_069972247.1 rhodanese-like domain-containing protein -
  AN159_RS01185 (AN159_01185) recB 212207..215821 (-) 3615 WP_069972248.1 exodeoxyribonuclease V subunit beta Machinery gene
  AN159_RS01190 (AN159_01190) - 216054..216962 (-) 909 WP_002246098.1 Dyp-type peroxidase -
  AN159_RS01195 (AN159_01195) - 217247..218074 (+) 828 WP_079871345.1 amino acid ABC transporter substrate-binding protein -
  AN159_RS01200 (AN159_01200) - 218064..218780 (+) 717 WP_002213985.1 amino acid ABC transporter permease -
  AN159_RS01205 (AN159_01205) - 218790..219545 (+) 756 WP_002222716.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134690.06 Da        Isoelectric Point: 5.6558

>NTDB_id=156583 AN159_RS01185 WP_069972248.1 212207..215821(-) (recB) [Neisseria meningitidis strain 331401]
MSASIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVLE
SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVEMTEEDGDRLLIPAQDFWRERVSNDPVLAALALKRKAVPQTVLAQISRYLSRPYLNFRRPQADLKQAQRNAETS
WQTICRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHADTLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAARGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQGQNVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQTRTPAA
LHKWLRDQISLAGNNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQTYAQEKDGITMLKQNW
RRVADNAPAGTDFAFTENAPPPAAYRSNAGQTAEFAANSIPERRFRFVRHTSFPALSRHTQTPDGGEEDACPSLDAAETS
VAAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEMWLPAVAEMAEACQKTPLT
GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPEGNICVI
DYKSNHLGADASAYTRQAMDEAVAHHHYYLQALIYAVASARYFKLRGQPPAAVSVRYLFLRGIDGKGGGVWHWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=156583 AN159_RS01185 WP_069972248.1 212207..215821(-) (recB) [Neisseria meningitidis strain 331401]
ATGTCTGCAAGCATCCAAGCATTCGACCCGCTAACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACACGCCTGATCGTATTAGAACAAAAAAACGTCGAACGCGTATTGGTCG
TAACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGGGCGTTTGGACGATGTGTTACAAGTTTTAGAA
AGCAAAGGAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGAACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAAATGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGCTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATTTCGC
GCTATCTTTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCATCTGCCGCCTGCTGCCAGAACTGGAAGCCGGCTTTTGGCGCATTCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACACACGACAGACTCTTGAAACTTGCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGACACTCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAGATTTTCATCGCCCA
AAACCGACCGCTGTTCCTCGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGCTGTCCCCCGAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCAGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGGGCAAAACGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGCTATAACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCCATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAACTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAACCCGCACCCCCGCCGCG
CTGCACAAATGGTTGCGCGACCAAATCAGCCTGGCCGGCAACAACAGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCCAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTTGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTATCTAATCGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCAAACCTATGCCCAAGAAAAGGACGGCATAACGATGCTCAAACAAAACTGG
CGGCGCGTGGCGGACAACGCCCCGGCCGGCACGGATTTCGCCTTCACCGAAAATGCGCCGCCCCCTGCCGCCTATCGCAG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTC
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTAGCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGATTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACTCTCATTGCCGACAAGC
TGAAGAAATACGGGTTTGAAGAAATGTGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCAGAAAACGCCGCTGACG
GGGGCATACTGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGAGGGAAATATCTGCGTCATC
GACTACAAATCAAACCATCTCGGCGCGGACGCATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCATCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCTCCGCGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTACGCGGCATAGACGGCAAAGGCGGCGGCGTTTGGCATTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(742-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1068-1181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

93.688

100

0.937

Multiple sequence alignment